Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.0e-220 768.8 400 100.0
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.2e-177 626.7 407 83.5
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.3e-147 526.9 410 71.5
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 6.0e-108 395.2 328 65.2
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 3.0e-107 392.9 393 56.7
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 2.2e-94 350.1 398 53.5
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 2.9e-94 349.7 398 53.5
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.1e-93 347.8 398 53.3
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 5.4e-93 345.5 348 59.5
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.6e-87 326.6 398 51.5
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.7e-86 323.9 398 51.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 5.7e-66 255.8 438 41.3
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.5e-37 159.5 364 32.4
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.4e-32 144.8 226 40.3
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 5.9e-31 139.4 226 39.4
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.7e-30 137.9 217 40.1
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.2e-30 137.5 434 30.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.9e-30 137.1 300 33.3
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 6.5e-30 136.0 204 41.7
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.5e-29 134.8 238 39.1
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-29 134.0 300 33.3
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 3.2e-29 133.7 300 33.3
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 4.2e-29 133.3 208 42.8
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.1e-28 131.0 300 33.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.7e-28 130.6 210 41.4
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.7e-28 130.6 279 36.2
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 3.6e-28 130.2 231 36.8
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.7e-28 129.8 212 41.5
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 6.1e-28 129.4 208 40.4
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 6.1e-28 129.4 209 40.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.2e-27 126.3 321 33.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 5.2e-27 126.3 211 40.3
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.5e-26 124.8 285 35.4
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.5e-26 124.8 220 38.6
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.6e-26 124.0 364 30.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.4e-26 123.6 263 36.9
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.4e-26 123.2 228 37.3
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 9.8e-26 122.1 259 34.7
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.4e-24 116.3 280 32.9
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.7e-22 111.3 219 34.7
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.2e-22 110.9 296 30.7
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.5e-21 107.5 272 34.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 9.5e-21 105.5 211 35.1
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 9.5e-21 105.5 202 35.6
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 9.5e-21 105.5 130 42.3
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.0e-18 97.8 166 36.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 5.7e-18 96.3 218 31.2
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.3e-17 95.1 160 36.9
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.7e-17 94.7 196 32.1
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 3.7e-17 93.6 200 33.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 4.9e-17 93.2 228 31.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 6.3e-17 92.8 109 42.2
Aa31sc309G40 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.1e-16 92.0 383 27.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.4e-16 91.7 221 29.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 5.4e-16 89.7 219 31.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.6e-15 88.2 154 33.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 2.0e-15 87.8 198 33.3
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.0e-15 87.8 210 32.4
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.5e-15 86.7 176 30.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 5.9e-15 86.3 205 30.2
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.8e-15 85.9 210 30.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.3e-14 85.1 158 34.2
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.3e-14 84.3 161 34.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 2.9e-14 84.0 232 31.9
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.9e-14 84.0 337 30.3
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.9e-14 84.0 270 27.4
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.8e-14 83.6 340 27.4
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.8e-14 83.6 197 32.0
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 6.6e-14 82.8 183 33.3
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-13 82.0 118 36.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.9e-13 81.3 196 32.1
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.5e-13 80.9 132 36.4
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.3e-13 80.5 180 33.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 4.3e-13 80.1 199 33.2
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.6e-13 79.7 117 37.6
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 9.5e-13 79.0 179 35.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 9.5e-13 79.0 169 31.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.1e-12 77.8 191 31.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.6e-12 77.0 139 34.5
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.7e-12 76.6 258 27.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 4.7e-12 76.6 195 29.7
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 4.7e-12 76.6 156 28.8
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 4.7e-12 76.6 118 39.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 8.0e-12 75.9 199 31.2
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-11 75.5 198 28.3
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.8e-11 74.7 222 27.5
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.8e-11 74.7 159 32.1
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.3e-11 74.3 214 29.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.0e-11 73.9 160 31.9
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 3.0e-11 73.9 173 30.1
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 3.0e-11 73.9 118 34.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.0e-11 73.6 169 29.0
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.0e-11 73.6 171 29.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.0e-10 71.2 204 31.9
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.0e-10 71.2 212 30.2
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.6e-10 70.9 131 32.1
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.6e-10 70.9 170 30.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 3.4e-10 70.5 167 29.9
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 3.4e-10 70.5 170 30.6
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.4e-10 70.1 257 28.8
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.7e-10 69.7 127 31.5
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 7.5e-10 69.3 128 35.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 7.5e-10 69.3 105 34.3
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.3e-09 68.6 214 27.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-09 68.6 219 29.7
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.3e-09 68.6 230 27.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.7e-09 68.2 235 27.2
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.7e-09 68.2 202 29.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-09 67.8 286 28.3
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-09 67.8 285 24.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.7e-09 67.0 169 28.4
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 6.4e-09 66.2 210 27.6
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.3e-09 65.9 219 29.7
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 8.3e-09 65.9 179 29.1
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.1e-08 65.5 289 24.2
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.4e-08 65.1 107 35.5
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.8e-08 64.7 105 38.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 3.2e-08 63.9 200 26.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 4.1e-08 63.5 209 28.2
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 4.1e-08 63.5 165 32.7
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.1e-08 63.5 110 33.6
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 4.1e-08 63.5 110 33.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 7.0e-08 62.8 210 28.1
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 7.0e-08 62.8 191 28.3
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-08 62.4 144 31.2
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-07 62.0 144 31.2
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.6e-07 61.6 108 33.3
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.6e-07 61.6 225 26.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.6e-07 61.6 98 33.7
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.0e-07 61.2 176 28.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.0e-07 61.2 199 29.6
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.7e-07 60.8 176 28.4
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 3.5e-07 60.5 248 25.4
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.6e-07 60.1 219 28.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.6e-07 60.1 187 24.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.9e-07 59.7 189 25.9
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 5.9e-07 59.7 73 39.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 5.9e-07 59.7 130 31.5
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.9e-07 59.7 106 34.0
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 7.8e-07 59.3 163 29.4
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.8e-07 59.3 398 25.6
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.0e-06 58.9 131 30.5
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.3e-06 58.5 195 26.2
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.3e-06 58.5 215 27.0
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 5.0e-06 56.6 96 31.2
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 5.0e-06 56.6 209 25.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.6e-06 55.8 103 29.1
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.6e-06 55.8 218 27.1


User provided reference genes

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