Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.5e-244 847.8 415 100.0
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 8.8e-171 604.0 401 77.3
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.3e-133 479.2 399 63.4
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.4e-120 436.4 344 66.0
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 6.6e-118 428.3 382 62.6
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.9e-117 426.8 404 58.2
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 1.2e-114 417.5 421 56.5
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 8.6e-110 401.4 400 55.2
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 1.5e-109 400.6 400 55.0
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 1.9e-109 400.2 379 59.9
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.8e-107 393.7 406 56.7
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.1e-104 384.4 342 61.4
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 6.2e-100 368.6 284 68.0
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 5.4e-96 355.5 407 51.6
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.5e-95 352.8 304 64.8
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 3.5e-95 352.8 406 51.0
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 6.7e-94 348.6 407 51.4
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 1.9e-93 347.1 394 51.8
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 4.3e-93 345.9 394 51.5
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 9.6e-93 344.7 410 51.0
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 1.8e-91 340.5 411 50.4
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 7.1e-80 302.0 322 53.7
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 3.4e-74 283.1 260 60.0
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 5.7e-69 265.8 407 41.3
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.7e-68 263.1 413 40.2
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 6.3e-68 262.3 221 59.3
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.2e-68 261.9 417 41.0
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 2.6e-66 256.9 268 55.2
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.9e-66 255.8 414 39.9
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.7e-65 254.2 417 41.0
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.8e-65 253.1 377 43.8
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.4e-64 251.1 415 40.5
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.5e-64 250.4 375 43.7
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.6e-63 247.7 387 42.4
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 2.1e-63 247.3 410 39.3
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 2.7e-63 246.9 405 38.0
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 4.6e-63 246.1 403 38.2
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 3.9e-62 243.0 406 38.2
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 8.8e-62 241.9 375 38.7
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 2.6e-61 240.4 404 38.9
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 2.6e-61 240.4 404 38.9
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 2.6e-61 240.4 375 38.4
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 3.3e-61 240.0 404 38.9
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 7.4e-61 238.8 374 40.9
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 3.1e-59 233.4 399 38.3
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 4.1e-59 233.0 375 38.1
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 4.1e-59 233.0 375 38.1
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.2e-58 231.5 375 38.1
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 5.9e-58 229.2 375 38.1
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 2.2e-57 227.3 407 37.6
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.9e-57 226.9 423 34.5
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.5e-57 225.7 347 43.5
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 7.2e-56 222.2 375 37.6
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.8e-54 215.3 407 37.3
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 3.3e-53 213.4 357 38.4
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.6e-50 203.8 373 37.3
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.0e-49 201.8 378 36.2
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 5.0e-49 199.5 401 37.2
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 5.0e-49 199.5 400 34.2
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 9.4e-48 195.3 188 58.0
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 4.7e-47 193.0 353 37.1
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.4e-46 191.4 305 42.0
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.0e-41 172.9 188 56.9
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.2e-40 169.9 417 33.1
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.2e-38 162.9 323 37.5
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.2e-37 161.8 334 35.3
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 1.2e-37 161.8 236 41.9
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 4.4e-37 159.8 408 32.8
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 4.4e-37 159.8 372 32.0
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.5e-37 159.1 282 41.5
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.3e-36 156.0 361 33.8
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.1e-35 155.2 323 34.7
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.6e-34 151.4 410 30.2
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 8.6e-33 145.6 339 31.9
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 3.2e-32 143.7 262 38.9
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 4.7e-31 139.8 185 43.2
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.7e-31 139.8 351 31.6
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.8e-30 137.9 189 40.7
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 2.9e-25 120.6 212 36.3
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 2.9e-25 120.6 212 36.3
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.6e-25 119.4 83 71.1
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 5.6e-24 116.3 327 30.0
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 3.0e-22 110.5 215 38.6
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 6.6e-17 92.8 120 48.3
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 4.3e-16 90.1 131 42.0
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 2.8e-15 87.4 377 26.8
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 3.6e-15 87.0 313 29.7
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 1.8e-14 84.7 101 41.6
BcaC01g05840 Brassica carinata HOM05D007494 ORTHO05D009621 8.9e-14 82.4 100 48.0
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 1.9e-11 74.7 118 37.3
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 7.0e-11 72.8 357 25.8
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 2.7e-10 70.9 289 26.3
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 2.7e-10 70.9 390 22.1
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 3.5e-10 70.5 84 47.6
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 3.5e-10 70.5 102 39.2
BcaC07g39503 Brassica carinata HOM05D007494 ORTHO05D032917 3.3e-08 63.9 99 33.3
C08p25480 Brassica napus HOM05D007494 ORTHO05D032917 3.3e-08 63.9 99 33.3
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 6.2e-07 59.7 389 24.2
FvH4_4g06300 Fragaria vesca HOM05D000664 ORTHO05D000491 6.2e-07 59.7 266 25.9
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 6.2e-07 59.7 285 25.3
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 8.1e-07 59.3 63 50.8
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 8.1e-07 59.3 257 26.5
FAN12G4320 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-06 58.5 266 25.9
FAN17G0956 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-06 58.5 263 25.9
CAN.G1631.2 Capsicum annuum HOM05D008697 ORTHO05D010866 2.3e-06 57.8 419 25.3
Nitab4.5_0003309g0040 Nicotiana tabacum HOM05D008697 ORTHO05D010866 8.9e-06 55.8 320 25.6


User provided reference genes

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