Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 3.6e-106 388.3 198 100.0
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.8e-97 359.4 198 91.9
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 5.1e-92 341.3 198 86.9
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 8.4e-87 323.9 198 82.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 4.2e-86 321.6 198 83.8
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.0e-84 315.5 199 82.9
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.6e-82 308.5 198 81.8
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 9.0e-81 303.9 198 81.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 8.4e-79 297.4 199 78.4
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 5.4e-78 294.7 192 79.7
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 1.7e-76 289.7 199 79.4
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 5.5e-70 268.1 184 74.5
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.3e-68 262.7 190 71.6
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.4e-62 243.4 191 69.6
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 9.3e-62 240.7 187 69.0
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-61 240.0 150 82.0
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.3e-59 232.3 150 80.0
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 9.6e-59 230.7 152 78.3
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.2e-55 219.5 192 59.9
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.2e-54 215.3 184 67.4
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.2e-54 215.3 184 67.4
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.1e-53 213.0 192 59.4
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.3e-52 210.3 181 59.7
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.3e-52 209.5 180 62.2
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.3e-52 209.5 180 62.2
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.0e-52 209.1 181 61.9
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.9e-52 208.8 179 59.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 5.1e-52 208.4 189 59.8
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 5.1e-52 208.4 164 63.4
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 6.7e-52 208.0 186 60.8
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 6.7e-52 208.0 181 59.7
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 6.7e-52 208.0 180 61.1
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 8.7e-52 207.6 187 58.3
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.8e-50 202.6 192 57.3
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 8.2e-50 201.1 164 60.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.4e-49 200.3 164 59.8
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.4e-49 199.5 189 58.2
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.4e-49 199.5 185 57.3
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 2.4e-49 199.5 188 58.5
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.4e-49 199.5 181 59.1
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.9e-49 198.0 164 65.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.2e-48 197.2 189 54.0
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 2.0e-48 196.4 184 58.2
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.0e-48 196.4 188 59.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.6e-48 196.1 187 59.9
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.6e-48 196.1 156 63.5
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.4e-48 195.7 156 64.1
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 4.5e-48 195.3 188 58.0
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 4.5e-48 195.3 187 57.2
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.9e-48 194.9 156 63.5
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 7.7e-48 194.5 189 57.7
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 7.7e-48 194.5 182 57.1
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.0e-47 194.1 198 53.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.7e-47 193.4 182 55.5
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.9e-47 192.6 184 53.3
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.9e-47 192.6 185 54.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.9e-47 192.6 159 59.7
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 2.9e-47 192.6 146 68.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 3.8e-47 192.2 157 62.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 3.8e-47 192.2 149 69.1
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 6.5e-47 191.4 189 56.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.4e-46 190.3 183 56.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 9.4e-46 187.6 182 57.7
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.1e-45 186.4 159 56.6
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.0e-44 184.1 183 51.9
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.3e-44 183.0 192 52.1
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.9e-44 182.2 140 68.6
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 6.7e-44 181.4 138 68.8
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.1e-43 180.6 169 57.4
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.5e-43 179.5 185 55.7
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 3.3e-43 179.1 182 56.6
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 4.3e-43 178.7 182 55.5
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.7e-43 178.3 189 51.3
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.7e-43 178.3 158 60.1
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 7.4e-43 177.9 167 57.5
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 9.7e-43 177.6 180 51.1
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-42 177.2 159 57.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 2.2e-42 176.4 162 58.6
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 3.7e-42 175.6 186 52.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 4.8e-42 175.3 180 51.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 6.3e-42 174.9 181 54.7
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 6.3e-42 174.9 182 54.4
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 8.2e-42 174.5 182 54.4
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.1e-41 174.1 182 53.8
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.1e-41 174.1 180 51.7
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.1e-41 174.1 183 55.2
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.1e-41 174.1 146 64.4
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.1e-41 174.1 180 55.0
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.1e-41 174.1 170 57.1
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-41 173.3 181 52.5
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.8e-41 173.3 159 60.4
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 4.1e-41 172.2 262 43.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-41 171.8 168 55.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-41 171.8 168 55.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 5.3e-41 171.8 168 55.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 9.1e-41 171.0 183 51.9
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.2e-40 170.6 133 64.7
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.2e-40 170.6 149 59.1
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.2e-40 170.6 159 59.7
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 2.2e-39 166.4 183 53.0
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 5.0e-39 165.2 168 51.2
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.1e-37 159.8 136 59.6
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 9.7e-35 151.0 176 47.2
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.7e-34 150.2 159 50.9
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.2e-34 149.8 140 62.9
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.8e-34 149.4 157 52.2
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 4.8e-34 148.7 199 43.7
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.1e-33 147.5 117 64.1
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 1.2e-32 144.1 117 61.5
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.6e-32 143.7 144 55.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.7e-31 140.2 159 49.1
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-27 126.7 148 50.0
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.6e-27 126.3 183 41.0
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 5.7e-27 125.2 155 45.8
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 9.7e-27 124.4 117 60.7
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.2e-24 117.5 106 56.6
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 2.5e-22 109.8 110 55.5
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 3.2e-22 109.4 104 57.7
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 9.4e-22 107.8 85 62.4
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 2.3e-20 103.2 118 55.9
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.3e-18 97.4 73 61.6
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.7e-18 97.1 166 39.2
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 4.8e-18 95.5 59 78.0
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 4.8e-18 95.5 158 38.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.8e-17 93.6 117 47.0
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.5e-16 89.0 91 53.8
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 7.2e-14 81.6 83 51.8
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.3e-10 70.9 74 52.7
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 1.3e-10 70.9 70 54.3
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 2.9e-07 59.7 79 44.3
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 2.5e-06 56.6 43 65.1
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 2.5e-06 56.6 43 65.1
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 3.3e-06 56.2 145 33.8
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 5.6e-06 55.5 153 28.1
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 9.5e-06 54.7 108 34.3


User provided reference genes

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