Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 9.9e-97 356.7 168 100.0
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 6.6e-93 344.0 168 95.8
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 2.0e-89 332.4 168 92.3
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.8e-89 330.9 168 90.5
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.6e-89 330.5 168 92.3
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 4.2e-87 324.7 168 88.7
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 7.6e-81 303.9 168 83.3
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.4e-79 298.9 168 82.1
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 3.2e-79 298.5 168 82.7
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 5.5e-79 297.7 168 82.7
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 5.5e-79 297.7 168 82.7
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 9.3e-79 297.0 168 82.1
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 3.5e-78 295.0 168 81.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.0e-77 293.5 168 78.6
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.9e-77 291.6 168 78.6
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.9e-77 291.6 168 79.2
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.1e-76 290.0 168 79.8
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.3e-75 286.6 168 78.0
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.1e-75 285.8 168 76.8
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 76.2
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 76.2
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 76.2
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.4e-74 283.1 168 76.2
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 4.0e-74 281.6 168 76.8
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 2.0e-73 279.3 168 75.6
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.6e-73 277.3 168 76.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.9e-72 275.4 173 74.6
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.9e-68 262.7 169 72.8
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 70.8
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 70.8
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.6e-67 259.6 168 70.8
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 9.0e-66 253.8 169 71.0
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 9.0e-66 253.8 169 71.0
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.2e-62 243.4 168 63.7
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 2.7e-62 242.3 168 63.7
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 3.9e-61 238.4 170 62.4
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 61.3
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.5e-60 235.7 168 62.5
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 60.1
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 4.3e-60 235.0 167 61.7
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 4.3e-60 235.0 167 61.7
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 4.3e-60 235.0 167 61.7
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 7.4e-60 234.2 168 59.5
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 7.4e-60 234.2 168 62.5
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 9.7e-60 233.8 169 61.5
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 60.1
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 58.9
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 58.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 60.7
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 4.8e-59 231.5 172 61.0
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 60.7
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 61.9
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.4e-58 229.9 168 59.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.4e-58 229.2 168 60.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 3.1e-58 228.8 168 60.1
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 59.5
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 5.3e-58 228.0 168 61.9
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 6.9e-58 227.6 168 61.9
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 6.9e-58 227.6 168 60.7
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 59.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.6e-57 225.7 168 60.1
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 5.9e-57 224.6 163 60.7
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 60.7
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 58.9
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 60.7
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.9e-56 222.2 168 60.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 5.0e-56 221.5 170 59.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 5.0e-56 221.5 168 59.5
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.4e-55 219.9 168 59.5
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.5e-55 219.2 170 55.9
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 7.2e-55 217.6 170 55.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 9.4e-55 217.2 170 56.5
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 59.5
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.6e-54 216.5 168 57.7
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 3.6e-54 215.3 168 56.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 6.1e-54 214.5 179 54.2
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 2.3e-53 212.6 170 58.8
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 6.7e-53 211.1 170 55.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 8.8e-53 210.7 168 56.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.0e-52 209.5 168 54.8
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.3e-52 208.8 168 58.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 4.3e-52 208.4 168 57.7
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 1.3e-51 206.8 167 56.3
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 54.8
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 4.8e-51 204.9 165 53.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 8.2e-51 204.1 169 58.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 8.2e-51 204.1 169 58.6
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.1e-50 203.8 152 61.8
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.1e-50 203.8 168 56.5
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 1.4e-50 203.4 168 56.5
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.8e-50 203.0 205 49.3
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 6.9e-50 201.1 168 53.6
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 9.1e-50 200.7 168 56.0
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 2.0e-49 199.5 169 56.2
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 2.6e-49 199.1 165 53.3
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 2.6e-49 199.1 168 53.0
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.9e-48 195.7 201 47.8
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 5.0e-48 194.9 184 52.7
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 6.5e-48 194.5 205 48.8
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.4e-47 193.4 190 48.4
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.9e-47 193.0 141 61.0
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.9e-47 193.0 166 50.6
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.5e-47 192.6 168 51.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.5e-47 192.6 168 51.8
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 3.2e-47 192.2 182 48.9
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 4.2e-47 191.8 172 50.6
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 4.2e-47 191.8 153 54.9
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 7.2e-47 191.0 168 52.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.6e-46 189.9 168 48.8
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 7.9e-46 187.6 237 42.6
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 3.7e-43 178.7 193 45.6
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.8e-42 176.4 137 56.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.1e-42 175.3 168 49.4
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.2e-41 173.7 140 57.1
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.0e-40 170.6 167 50.3
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.7e-40 169.9 190 44.2
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.2e-40 169.5 169 49.7
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.2e-40 169.5 125 55.2
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 6.7e-37 157.9 151 52.3
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.8e-35 152.5 145 47.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 3.1e-34 149.1 104 61.5
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 4.1e-34 148.7 111 56.8
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 4.5e-33 145.2 168 43.5
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.2e-32 142.9 173 41.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 3.8e-32 142.1 126 54.0
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 9.4e-31 137.5 174 40.2
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.6e-30 136.7 169 39.6
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 3.6e-30 135.6 169 39.1
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 6.1e-30 134.8 186 38.2
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 1.2e-28 130.6 90 64.4
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.5e-28 130.2 168 41.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 7.0e-26 121.3 171 40.4
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 8.5e-24 114.4 169 36.7
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 4.2e-23 112.1 97 56.7
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 7.2e-23 111.3 157 40.1
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.7e-22 108.6 122 41.8
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.7e-19 100.1 184 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 8.3e-19 97.8 171 32.2
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 8.3e-19 97.8 163 34.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.0e-18 94.7 142 33.8
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 9.2e-18 94.4 169 29.0
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 2.9e-16 89.4 98 39.8
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-15 87.4 112 44.6
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.6e-14 82.4 52 67.3
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 4.4e-12 75.5 67 52.2


User provided reference genes

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