Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.4e-248 861.7 421 100.0
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.5e-122 443.7 434 59.2
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.8e-107 393.7 409 54.5
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 7.2e-80 302.0 445 45.2
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.2e-71 274.6 378 41.8
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.0e-65 255.0 445 40.0
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.5e-61 241.1 354 41.0
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.9e-60 236.9 359 43.2
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 1.9e-59 234.2 413 38.7
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 5.4e-59 232.6 419 39.1
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 1.0e-57 228.4 327 44.6
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 1.7e-57 227.6 409 39.4
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.3e-57 227.3 363 40.8
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.3e-57 227.3 428 36.9
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.9e-57 226.5 350 40.3
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 5.1e-57 226.1 349 38.4
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 5.1e-57 226.1 349 38.4
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.6e-57 225.3 352 40.3
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 2.5e-56 223.8 351 37.0
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 5.6e-56 222.6 399 39.6
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 2.8e-55 220.3 351 37.6
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 8.1e-55 218.8 351 37.3
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 8.1e-55 218.8 351 37.3
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 3.7e-52 209.9 417 37.2
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-51 208.4 348 37.4
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-51 206.8 391 38.4
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 3.2e-51 206.8 348 38.8
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-49 201.4 377 37.7
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-49 201.4 377 37.7
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-49 201.4 391 37.1
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.3e-49 201.4 258 44.6
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 6.6e-49 199.1 351 35.3
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.2e-47 194.9 257 47.1
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 3.1e-46 190.3 372 35.8
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-45 188.3 403 33.3
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-44 184.9 197 50.8
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 4.6e-42 176.4 294 39.8
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 7.8e-42 175.6 275 38.9
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.0e-41 175.3 300 38.3
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.6e-41 172.6 409 33.3
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.1e-40 171.8 386 32.1
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 5.6e-40 169.5 226 46.5
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.6e-39 167.9 405 31.9
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 3.6e-39 166.8 320 33.8
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 1.1e-38 165.2 229 44.1
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 4.0e-38 163.3 297 37.0
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 9.9e-37 158.7 401 30.2
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 3.8e-36 156.8 369 33.1
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 4.9e-36 156.4 366 32.8
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.2e-35 153.7 358 31.6
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-34 151.8 410 30.2
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 1.2e-34 151.8 367 33.0
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.6e-34 149.8 294 33.7
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 1.0e-33 148.7 400 29.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 1.3e-33 148.3 388 32.5
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 4.3e-32 143.3 311 34.4
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-31 141.7 354 32.8
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 1.6e-31 141.4 354 32.8
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.4e-30 138.3 286 37.1
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 4.0e-30 136.7 204 43.6
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 5.3e-30 136.3 373 30.6
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 1.5e-29 134.8 366 30.6
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.5e-29 134.8 265 33.6
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.0e-29 134.4 194 41.8
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 5.8e-29 132.9 417 29.3
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 9.9e-29 132.1 369 30.1
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 2.2e-28 131.0 380 30.0
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.1e-26 124.4 224 39.7
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 1.0e-25 122.1 207 39.6
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.3e-25 120.9 238 36.1
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.0e-25 120.6 318 30.2
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.7e-25 119.4 173 44.5
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 1.9e-24 117.9 121 50.4
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 9.6e-24 115.5 358 28.5
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 3.7e-23 113.6 214 35.5
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 3.7e-23 113.6 161 44.1
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 1.8e-22 111.3 243 37.0
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 1.8e-22 111.3 272 33.5
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 5.8e-21 106.3 241 32.8
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 7.6e-21 105.9 374 27.5
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 6.4e-20 102.8 107 51.4
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 4.2e-19 100.1 343 25.4
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 1.6e-18 98.2 194 38.7
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 3.5e-18 97.1 174 37.4
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.3e-16 90.5 155 41.9
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 7.4e-16 89.4 111 48.6
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 9.0e-14 82.4 113 43.4
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 7.6e-13 79.3 88 53.4
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 7.6e-13 79.3 115 41.7
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 7.6e-13 79.3 88 53.4
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 4.9e-12 76.6 161 33.5
A06p16790 Brassica napus HOM05D013746 ORTHO05D015945 5.1e-09 66.6 44 68.2
A08p29240 Brassica napus HOM05D013746 ORTHO05D015945 5.1e-09 66.6 113 42.5
BraA06t24786Z Brassica rapa HOM05D013746 ORTHO05D015945 5.1e-09 66.6 44 68.2
BraA08t34859Z Brassica rapa HOM05D013746 ORTHO05D015945 5.1e-09 66.6 113 42.5
BcaB03g12852 Brassica carinata HOM05D013746 ORTHO05D015945 6.7e-09 66.2 76 48.7
BcaC05g25981 Brassica carinata HOM05D013746 ORTHO05D015945 1.1e-08 65.5 44 65.9
C05p19350 Brassica napus HOM05D013746 ORTHO05D015945 1.1e-08 65.5 44 65.9
BolC5t30638H Brassica oleracea HOM05D013746 ORTHO05D015945 1.1e-08 65.5 44 65.9
BcaC07g39503 Brassica carinata HOM05D007494 ORTHO05D032917 1.9e-08 64.7 135 33.3
C08p25480 Brassica napus HOM05D007494 ORTHO05D032917 1.9e-08 64.7 135 33.3
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.3e-08 63.5 31 83.9
Aa31LG8G15320 Aethionema arabicum HOM05D007494 ORTHO05D009621 9.7e-08 62.4 100 36.0
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 9.7e-08 62.4 87 43.7
BcaB07g32072 Brassica carinata HOM05D013746 ORTHO05D015945 3.7e-07 60.5 44 63.6
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 3.7e-07 60.5 147 28.6
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 6.3e-07 59.7 47 57.4
Actinidia11171 Actinidia chinensis HOM05D008697 ORTHO05D010866 5.3e-06 56.6 181 23.8


User provided reference genes

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