Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 1.5e-113 412.9 216 100.0
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 2.8e-104 382.1 216 91.7
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.3e-93 346.7 217 87.1
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.2e-93 345.9 214 86.0
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.0e-90 337.0 215 82.8
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.4e-90 336.7 214 82.7
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.8e-90 336.3 215 82.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.8e-90 334.3 214 84.1
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 1.2e-89 333.6 213 83.6
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 4.1e-87 325.1 215 81.9
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 4.1e-87 325.1 215 81.9
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.2e-86 323.6 217 81.6
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.0e-86 322.8 216 82.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.9e-84 316.2 222 80.6
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 9.4e-84 313.9 215 82.8
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 6.8e-82 307.8 215 79.1
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 6.8e-82 307.8 216 81.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 9.8e-81 303.9 211 80.6
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.5e-76 290.0 209 77.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 8.9e-66 254.2 213 64.8
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 2.2e-48 196.4 214 50.5
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 6.4e-48 194.9 217 54.4
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.6e-46 190.3 195 56.4
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.7e-46 189.5 191 51.8
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.6e-46 188.7 220 50.5
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 7.8e-46 188.0 188 53.2
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.3e-45 186.4 222 49.1
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 5.1e-45 185.3 215 49.3
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.5e-44 183.7 217 50.2
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 4.3e-44 182.2 220 49.5
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 4.3e-44 182.2 183 56.3
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 5.6e-44 181.8 215 51.6
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 7.3e-44 181.4 193 51.8
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 9.6e-44 181.0 196 51.0
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 9.6e-44 181.0 199 51.8
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.1e-43 179.9 185 57.8
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.8e-43 179.5 196 51.5
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.8e-42 176.8 192 51.0
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 3.1e-42 176.0 187 52.4
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 6.9e-42 174.9 187 51.9
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.5e-41 173.7 212 49.1
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 2.0e-41 173.3 195 49.7
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 3.4e-41 172.6 204 51.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 1.7e-40 170.2 190 52.1
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 8.4e-40 167.9 211 45.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.4e-40 167.9 191 51.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.1e-39 167.5 187 50.3
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.4e-39 167.2 189 49.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 4.2e-39 165.6 191 49.7
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 7.1e-39 164.9 190 50.0
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 9.3e-39 164.5 191 51.3
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 9.3e-39 164.5 204 50.0
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.6e-38 163.7 186 49.5
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 2.1e-38 163.3 189 50.3
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 2.1e-38 163.3 190 48.4
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.7e-38 162.9 219 46.6
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.7e-38 162.9 167 55.1
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.7e-38 162.9 218 48.2
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.7e-38 162.9 187 50.8
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 3.5e-38 162.5 193 48.2
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.5e-38 162.5 205 49.8
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.5e-38 162.5 201 49.8
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 7.8e-38 161.4 190 48.4
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.0e-37 161.0 187 48.7
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.0e-37 161.0 205 49.3
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.0e-37 161.0 214 46.3
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.3e-37 160.6 189 49.7
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.7e-37 160.2 194 48.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.7e-37 160.2 214 48.1
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.3e-37 159.8 205 46.8
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.3e-37 159.8 194 51.0
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.3e-37 159.8 213 44.6
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 3.0e-37 159.5 211 45.0
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.0e-37 159.5 202 45.5
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 5.1e-37 158.7 180 48.9
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 5.1e-37 158.7 237 46.0
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 6.6e-37 158.3 199 47.7
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 8.7e-37 157.9 186 48.4
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 8.7e-37 157.9 199 48.7
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.1e-36 157.5 210 47.1
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.1e-36 157.5 194 47.9
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.1e-36 157.5 210 46.2
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.1e-36 157.5 210 46.2
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.1e-36 157.5 216 45.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.5e-36 156.4 216 45.4
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 7.3e-36 154.8 204 45.1
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 9.6e-36 154.5 225 42.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 9.6e-36 154.5 188 48.4
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.3e-35 154.1 184 45.1
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.8e-35 152.9 188 44.7
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 8.1e-35 151.4 179 47.5
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 1.1e-34 151.0 186 46.8
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.1e-34 151.0 210 44.8
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.4e-34 150.6 183 47.5
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 2.4e-34 149.8 184 47.3
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 2.4e-34 149.8 185 44.9
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.1e-34 149.4 213 44.6
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 6.9e-34 148.3 158 54.4
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.0e-33 146.7 186 44.1
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 5.8e-33 145.2 161 50.9
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 1.1e-31 141.0 265 37.4
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.9e-31 140.2 229 41.0
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.2e-30 137.5 186 47.8
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 2.1e-30 136.7 165 47.3
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 2.7e-30 136.3 177 45.8
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 3.5e-30 136.0 220 41.8
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 6.0e-30 135.2 222 37.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.3e-27 127.5 204 40.2
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 2.4e-26 123.2 263 36.9
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 8.4e-24 114.8 151 44.4
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.3e-21 107.5 184 39.7
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.7e-19 99.4 113 47.8
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.1e-19 98.2 121 46.3
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.1e-18 97.8 104 48.1
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.4e-18 96.7 286 30.1
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 2.6e-17 93.2 210 33.8
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 1.7e-16 90.5 68 66.2
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 7.1e-15 85.1 97 47.4
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 1.3e-13 80.9 203 30.0
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.8e-10 70.5 215 29.8
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.5e-07 60.1 141 29.8
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 2.5e-07 60.1 71 49.3
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 4.2e-07 59.3 56 50.0
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 6.1e-06 55.5 42 59.5


User provided reference genes

Program Settings