Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-230 802.7 397 100.0
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-169 600.1 398 76.4
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.1e-106 391.0 406 56.7
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.0e-100 370.2 402 53.5
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.9e-100 368.6 401 54.1
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 2.2e-94 350.1 400 51.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 3.7e-94 349.4 382 54.2
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.2e-93 346.3 335 57.3
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 5.4e-93 345.5 406 51.0
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 7.0e-93 345.1 400 51.2
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 1.0e-91 341.3 423 50.4
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 3.9e-91 339.3 406 50.2
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 2.5e-90 336.7 380 53.2
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 3.3e-90 336.3 398 50.5
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 9.5e-90 334.7 406 49.5
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 6.2e-89 332.0 406 50.2
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.0e-89 331.6 305 60.3
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 4.0e-88 329.3 394 50.5
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 8.9e-88 328.2 395 51.1
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 7.3e-82 308.5 322 55.6
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 5.4e-77 292.4 290 59.3
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.3e-74 282.7 337 51.3
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.4e-69 265.8 416 43.3
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.0e-68 262.3 420 41.0
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.7e-67 258.5 379 46.2
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 2.5e-66 256.9 402 41.5
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-65 254.6 374 45.7
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 1.4e-64 251.1 257 57.2
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 2.0e-63 247.3 260 54.6
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 4.4e-63 246.1 404 40.6
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 9.9e-63 245.0 409 43.8
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.7e-62 244.2 413 42.4
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.1e-61 241.5 414 42.3
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.4e-61 241.1 385 43.9
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 4.2e-61 239.6 400 41.2
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 4.2e-61 239.6 413 40.2
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 4.2e-61 239.6 400 41.2
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 4.6e-60 236.1 409 40.6
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 6.6e-59 232.3 389 41.9
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 1.9e-58 230.7 401 40.4
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 4.3e-58 229.6 404 39.4
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 6.2e-57 225.7 403 40.2
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.1e-56 224.9 305 46.6
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 1.8e-56 224.2 404 38.6
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.2e-55 221.5 345 45.2
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.4e-55 219.9 213 54.5
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.2e-52 211.5 386 38.3
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.2e-52 211.5 392 38.8
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 2.1e-52 210.7 384 39.3
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 6.0e-52 209.1 392 38.5
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 6.0e-52 209.1 392 38.5
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 6.0e-52 209.1 384 39.1
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-51 208.4 412 39.1
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.3e-50 203.4 392 36.5
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-49 201.4 399 36.8
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 5.3e-48 196.1 398 35.7
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 9.0e-48 195.3 383 38.1
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 4.5e-47 193.0 384 37.5
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 1.0e-46 191.8 359 38.2
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 6.0e-44 182.6 379 35.1
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 2.5e-42 177.2 185 53.5
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.2e-39 168.3 330 39.1
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 5.8e-39 166.0 386 35.5
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.3e-38 164.9 405 31.9
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 5.0e-38 162.9 401 31.9
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.5e-37 159.5 181 52.5
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.2e-36 158.3 327 36.4
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 5.1e-35 152.9 413 32.0
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.1e-34 151.8 350 36.6
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.9e-34 151.0 284 43.3
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 2.2e-33 147.5 225 41.8
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.2e-33 147.5 382 34.0
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.2e-33 147.5 378 32.5
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 1.8e-32 144.4 269 38.7
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.6e-31 140.6 359 32.6
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.7e-30 137.9 349 33.0
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 9.4e-29 132.1 92 69.6
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 6.1e-28 129.4 190 42.1
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 6.1e-28 129.4 185 44.3
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 1.5e-26 124.8 216 38.0
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-26 124.8 216 38.0
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.4e-24 118.2 331 33.8
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 9.4e-21 105.5 122 51.6
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 1.2e-20 105.1 406 29.1
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 3.6e-20 103.6 232 38.4
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.8e-16 91.3 171 40.4
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 2.4e-16 90.9 122 46.7
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 3.2e-13 80.5 307 29.3
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 1.0e-11 75.5 363 27.5
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 6.7e-11 72.8 297 26.9
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 4.4e-10 70.1 147 30.6
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 4.4e-10 70.1 47 72.3
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 5.7e-10 69.7 49 63.3
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 1.3e-09 68.6 102 35.3
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 3.7e-09 67.0 41 70.7
BcaC01g05840 Brassica carinata HOM05D007494 ORTHO05D009621 3.7e-09 67.0 95 42.1
A08p29240 Brassica napus HOM05D013746 ORTHO05D015945 1.1e-08 65.5 52 55.8
BraA08t34859Z Brassica rapa HOM05D013746 ORTHO05D015945 1.1e-08 65.5 52 55.8
BcaC05g25981 Brassica carinata HOM05D013746 ORTHO05D015945 1.8e-08 64.7 55 56.4
C05p19350 Brassica napus HOM05D013746 ORTHO05D015945 1.8e-08 64.7 55 56.4
BolC5t30638H Brassica oleracea HOM05D013746 ORTHO05D015945 1.8e-08 64.7 55 56.4
A06p16790 Brassica napus HOM05D013746 ORTHO05D015945 2.0e-07 61.2 43 65.1
BraA06t24786Z Brassica rapa HOM05D013746 ORTHO05D015945 2.0e-07 61.2 43 65.1
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 3.5e-07 60.5 104 33.7
BcaB07g32072 Brassica carinata HOM05D013746 ORTHO05D015945 1.0e-06 58.9 56 53.6
Peaxi162Scf00171g00817 Petunia axillaris HOM05D008697 ORTHO05D010866 1.0e-06 58.9 296 25.7
BcaB03g12852 Brassica carinata HOM05D013746 ORTHO05D015945 1.3e-06 58.5 56 48.2
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 2.2e-06 57.8 173 25.4
QL04p044901 Quercus lobata HOM05D000007 ORTHO05D000039 5.0e-06 56.6 269 25.7


User provided reference genes

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