Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.9e-176 621.3 303 100.0
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.0e-96 355.9 304 64.8
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.1e-93 345.5 306 60.1
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 4.5e-92 342.0 301 60.1
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.3e-90 335.9 305 60.3
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 8.9e-88 327.8 293 61.8
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 2.6e-87 326.2 299 61.5
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 3.7e-86 322.4 299 61.9
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 3.2e-85 319.3 274 63.9
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-84 316.2 303 60.4
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 1.0e-83 314.3 298 58.1
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 2.3e-83 313.2 293 60.8
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 1.9e-82 310.1 296 57.8
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 3.3e-82 309.3 306 58.8
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 4.3e-82 308.9 283 61.5
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 7.3e-82 308.1 288 61.1
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 2.1e-81 306.6 288 60.8
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 3.1e-80 302.8 295 56.9
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 5.8e-79 298.5 277 61.0
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 9.2e-77 291.2 295 56.6
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.2e-76 290.8 235 65.5
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 2.9e-70 269.6 252 60.7
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.3e-62 244.2 235 60.4
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 7.3e-58 228.4 296 45.6
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-57 227.6 298 48.3
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.2e-57 227.6 303 48.8
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 4.7e-57 225.7 203 60.6
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.4e-56 223.4 305 48.2
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-55 220.7 298 49.7
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.5e-55 220.7 302 48.0
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.5e-55 220.7 302 50.0
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.6e-55 219.9 312 46.2
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 2.2e-54 216.9 293 48.5
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 3.2e-53 213.0 301 45.5
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.1e-52 210.3 301 44.5
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 3.9e-51 206.1 302 46.4
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 8.7e-51 204.9 304 42.8
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 8.7e-51 204.9 304 42.4
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 8.7e-51 204.9 304 42.4
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-50 204.5 304 43.1
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 3.3e-50 203.0 304 42.8
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.3e-50 203.0 293 47.1
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 5.6e-50 202.2 300 44.0
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 7.3e-50 201.8 295 44.1
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 3.1e-48 196.4 300 43.7
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 3.1e-48 196.4 309 39.8
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 5.3e-48 195.7 321 37.4
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 1.5e-47 194.1 295 43.7
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 2.0e-47 193.7 300 41.0
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 2.2e-46 190.3 312 39.1
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 2.9e-46 189.9 290 39.7
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 2.9e-46 189.9 290 39.7
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 3.8e-46 189.5 309 40.5
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 6.4e-46 188.7 310 40.3
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 8.4e-46 188.3 292 40.8
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 1.4e-45 187.6 303 39.3
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 3.2e-45 186.4 299 38.5
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 7.9e-44 181.8 318 36.8
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 1.0e-43 181.4 291 43.6
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.3e-43 180.3 126 69.8
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 3.0e-43 179.9 311 40.5
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 9.6e-42 174.9 298 40.3
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.3e-35 154.5 310 35.2
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 1.6e-33 147.5 251 40.6
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 8.2e-33 145.2 290 34.1
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 1.1e-32 144.8 93 76.3
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 2.4e-32 143.7 289 34.6
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.9e-32 142.1 250 42.8
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 4.5e-31 139.4 286 37.1
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.7e-30 137.5 296 34.1
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 1.0e-27 128.3 298 35.2
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-27 127.9 200 40.0
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-27 127.9 200 40.0
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 8.7e-27 125.2 81 74.1
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 3.3e-26 123.2 301 35.5
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.2e-25 118.6 86 74.4
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.9e-24 115.5 277 36.1
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.9e-22 110.2 165 43.6
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 1.9e-21 107.5 142 43.0
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 4.2e-21 106.3 117 53.8
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.1e-20 104.0 276 34.1
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 3.0e-19 100.1 289 31.1
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 6.7e-19 99.0 205 37.6
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.0e-15 87.4 95 49.5
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-14 84.7 91 49.5
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 4.7e-12 76.3 116 40.5
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 7.9e-12 75.5 208 30.8
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 6.7e-11 72.4 244 29.5
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 4.4e-10 69.7 107 43.0
DCAR_011704 Daucus carota HOM05D000007 ORTHO05D000017 9.7e-10 68.6 253 24.1
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 1.7e-09 67.8 85 43.5
BraA08t34812Z Brassica rapa HOM05D007494 ORTHO05D009621 2.2e-09 67.4 61 63.9
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 2.8e-09 67.0 92 35.9
SGA_v2.0_scaffold5G03004 Striga asiatica HOM05D000007 ORTHO05D000039 4.8e-09 66.2 300 25.3
Oeu004534.1 Olea europaea HOM05D008697 ORTHO05D010866 1.8e-08 64.3 315 23.8
COL.COLO4_37360 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.4e-08 63.9 253 28.1
Carub.0001s2993 Capsella rubella HOM05D001738 ORTHO05D001644 5.3e-08 62.8 274 23.7
Thecc.04G270700 Theobroma cacao HOM05D000007 ORTHO05D000017 5.3e-08 62.8 242 26.4
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 9.1e-08 62.0 45 66.7
FAN16G2717 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-07 60.8 216 25.5
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 2.0e-07 60.8 243 27.2
Aa31LG4G13090 Aethionema arabicum HOM05D001738 ORTHO05D001644 2.6e-07 60.5 254 25.2
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 2.6e-07 60.5 235 27.2
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 5.9e-07 59.3 245 26.5
DCAR_011705 Daucus carota HOM05D000007 ORTHO05D000017 7.7e-07 58.9 253 26.5
Eucgr.H02812 Eucalyptus grandis HOM05D000007 ORTHO05D000017 7.7e-07 58.9 223 28.3
COL.COLO4_37365 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.3e-06 58.2 252 25.8
Migut.N00360 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.3e-06 58.2 278 22.7
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 1.3e-06 58.2 240 23.3
Potri.005G254500 Populus trichocarpa HOM05D000664 ORTHO05D010866 1.7e-06 57.8 319 28.2
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 1.7e-06 57.8 113 28.3
AT1G20803 Arabidopsis thaliana HOM05D013746 ORTHO05D015945 2.2e-06 57.4 43 62.8
Aqoxy5G01823 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.8e-06 56.6 234 25.6
A08p29240 Brassica napus HOM05D013746 ORTHO05D015945 5.0e-06 56.2 58 48.3
BraA08t34859Z Brassica rapa HOM05D013746 ORTHO05D015945 5.0e-06 56.2 58 48.3


User provided reference genes

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