Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.3e-129 466.5 241 100.0
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 1.4e-99 366.7 240 81.2
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 7.5e-90 334.3 245 75.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.2e-81 306.2 237 70.9
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 3.7e-81 305.4 254 69.7
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.7e-79 299.3 256 67.2
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-73 280.4 258 62.4
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 7.8e-71 271.2 255 62.0
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 7.8e-71 271.2 255 61.6
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 4.3e-69 265.4 256 61.3
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 4.3e-69 265.4 256 61.3
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 9.6e-69 264.2 256 61.3
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 1.2e-66 257.3 259 61.4
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 1.3e-65 253.8 259 61.4
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-65 253.8 259 61.4
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 4.9e-65 251.9 253 60.1
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.4e-64 250.4 257 61.1
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.9e-64 250.0 257 61.1
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 7.6e-58 228.0 229 60.7
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 6.7e-46 188.3 263 46.4
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.1e-45 187.6 275 47.3
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 3.3e-45 186.0 271 48.7
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.1e-44 183.3 270 47.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.8e-44 183.0 278 45.7
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 5.3e-43 178.7 275 45.5
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 3.8e-41 172.6 199 57.3
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 3.8e-41 172.6 267 45.7
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 1.1e-40 171.0 267 44.9
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 3.2e-40 169.5 268 44.8
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 1.6e-39 167.2 268 45.9
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.6e-39 167.2 268 45.9
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.1e-39 166.8 268 45.9
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 2.1e-39 166.8 271 44.3
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 7.9e-39 164.9 268 45.5
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 7.9e-39 164.9 267 45.7
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 3.7e-36 156.0 265 42.6
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.4e-35 154.1 284 43.0
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 1.5e-34 150.6 247 43.7
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 2.7e-31 139.8 165 55.8
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 6.1e-31 138.7 269 40.5
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 1.4e-30 137.5 195 47.7
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 9.4e-24 114.8 252 38.5
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 4.7e-23 112.5 261 37.5
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.5e-21 107.5 270 36.7
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.0e-21 107.1 270 37.0
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 7.4e-21 105.1 268 35.1
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 7.4e-21 105.1 262 35.5
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 1.7e-20 104.0 261 34.1
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.7e-20 104.0 270 36.3
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 2.2e-20 103.6 264 33.3
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 3.7e-20 102.8 268 34.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 4.8e-20 102.4 262 37.0
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 5.3e-19 99.0 277 34.7
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 7.0e-19 98.6 257 35.0
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 1.2e-18 97.8 266 31.6
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.6e-18 97.4 275 31.6
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 2.0e-18 97.1 257 33.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.6e-18 96.7 269 34.2
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 4.5e-18 95.9 263 33.5
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 5.9e-18 95.5 264 34.1
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 1.3e-17 94.4 236 31.8
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.3e-17 94.4 260 33.5
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 1.7e-17 94.0 290 31.7
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 1.7e-17 94.0 250 34.8
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 2.2e-17 93.6 256 34.4
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 5.0e-17 92.4 271 34.3
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 5.0e-17 92.4 271 34.3
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 6.5e-17 92.0 223 33.2
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 8.5e-17 91.7 279 33.0
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 8.5e-17 91.7 248 33.9
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 3.2e-16 89.7 139 43.9
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 3.2e-16 89.7 256 30.5
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 5.5e-16 89.0 272 32.0
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 7.2e-16 88.6 258 31.4
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 7.2e-16 88.6 266 31.6
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.2e-16 88.6 247 31.6
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.4e-16 88.2 248 31.0
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.2e-15 87.8 246 32.1
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.2e-15 87.8 268 33.6
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.6e-15 87.4 268 32.1
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 2.1e-15 87.0 257 32.3
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.7e-15 86.7 258 30.2
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 2.7e-15 86.7 258 34.9
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.7e-15 86.7 259 34.7
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 3.6e-15 86.3 260 34.6
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 3.6e-15 86.3 283 32.2
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 6.1e-15 85.5 269 32.0
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 8.0e-15 85.1 276 30.1
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 8.0e-15 85.1 291 31.3
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 1.0e-14 84.7 248 32.7
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 1.4e-14 84.3 286 29.7
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 1.4e-14 84.3 228 33.8
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 2.3e-14 83.6 296 30.4
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.3e-14 83.6 241 32.0
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 4.0e-14 82.8 269 32.0
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 4.0e-14 82.8 260 29.6
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 4.0e-14 82.8 280 29.6
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 4.0e-14 82.8 267 30.7
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.2e-14 82.4 261 32.2
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 6.7e-14 82.0 238 31.5
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 8.8e-14 81.6 261 29.1
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.2e-13 81.3 260 29.6
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 2.0e-13 80.5 264 32.6
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 2.6e-13 80.1 247 30.4
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 2.6e-13 80.1 270 31.1
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 3.3e-13 79.7 265 29.1
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.3e-13 79.7 264 29.5
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 4.4e-13 79.3 286 29.0
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 4.4e-13 79.3 249 29.3
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.4e-13 79.3 272 32.0
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 5.7e-13 79.0 268 32.1
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 5.7e-13 79.0 267 30.0
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 7.5e-13 78.6 241 31.1
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 9.7e-13 78.2 257 30.4
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.3e-12 77.8 269 30.9
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 1.3e-12 77.8 240 30.0
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.7e-12 77.4 282 31.9
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.2e-12 77.0 244 30.7
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 2.2e-12 77.0 265 30.6
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 2.8e-12 76.6 267 32.6
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 2.8e-12 76.6 270 29.3
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 2.8e-12 76.6 266 27.1
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 6.3e-12 75.5 245 33.5
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 6.3e-12 75.5 185 35.7
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 6.3e-12 75.5 275 29.5
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 8.2e-12 75.1 278 29.1
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 8.2e-12 75.1 267 28.8
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 1.1e-11 74.7 271 28.8
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.1e-11 74.7 289 26.6
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 1.4e-11 74.3 288 28.8
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 1.4e-11 74.3 198 28.3
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 1.8e-11 73.9 256 29.7
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.8e-11 73.9 267 30.0
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 4.1e-11 72.8 275 30.9
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 4.1e-11 72.8 278 28.8
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 7.0e-11 72.0 263 28.9
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 9.1e-11 71.6 266 28.9
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.6e-10 70.9 285 28.8
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.6e-10 70.9 257 29.2
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 1.6e-10 70.9 219 29.2
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.6e-10 70.9 268 30.2
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.0e-10 70.5 272 29.8
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 2.7e-10 70.1 276 28.6
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.7e-10 70.1 264 30.7
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 1.0e-09 68.2 277 29.2
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.3e-09 67.8 251 27.9
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 3.8e-09 66.2 254 28.3
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 8.5e-09 65.1 185 33.5
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 1.1e-08 64.7 253 30.0
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.5e-08 64.3 205 29.8
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 2.5e-08 63.5 179 31.3
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 5.5e-08 62.4 191 28.8
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.2e-07 61.2 216 30.1
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 1.2e-07 61.2 226 29.2
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.2e-07 61.2 253 29.6
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.2e-07 61.2 256 29.3
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.6e-07 60.8 254 28.0
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.6e-07 60.8 261 29.1
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 1.6e-07 60.8 258 31.4
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 1.6e-07 60.8 228 28.5
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 2.1e-07 60.5 276 27.5
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 3.6e-07 59.7 226 29.2
CiPaw.07G063500 Carya illinoinensis HOM05D003173 ORTHO05D003546 6.1e-07 58.9 137 32.8
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 1.0e-06 58.2 214 28.0
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 1.4e-06 57.8 226 28.8
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 1.4e-06 57.8 205 29.3
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 4.0e-06 56.2 276 28.3
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 4.0e-06 56.2 174 32.2
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 8.8e-06 55.1 274 27.7


User provided reference genes

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