Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 4.2e-206 721.1 353 100.0
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 4.2e-182 641.3 354 89.8
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 8.0e-173 610.5 353 85.0
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 1.3e-170 603.2 353 84.4
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 5.2e-164 581.3 353 82.2
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 5.9e-160 567.8 355 80.0
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.5e-158 563.1 354 80.8
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 2.0e-155 552.7 351 79.2
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.3e-154 550.1 351 79.2
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 5.4e-145 518.1 351 71.2
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 6.0e-144 514.6 354 71.2
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.1e-141 506.1 299 81.9
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 1.4e-140 503.4 277 87.7
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 8.1e-109 397.9 346 57.2
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 7.6e-107 391.3 345 56.8
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.4e-106 388.3 340 56.5
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 4.2e-105 385.6 343 55.4
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 7.1e-105 384.8 354 54.0
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 4.6e-104 382.1 310 59.0
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.3e-103 380.6 348 54.3
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.3e-103 380.6 354 54.5
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.9e-103 379.0 333 57.1
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 8.7e-103 377.9 353 53.8
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.5e-102 377.1 296 60.8
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 1.9e-102 376.7 346 56.1
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.5e-102 376.3 350 53.4
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 3.3e-102 375.9 301 60.8
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 5.6e-102 375.2 355 54.1
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.8e-101 372.9 350 53.1
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 3.7e-101 372.5 369 52.6
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 4.8e-101 372.1 343 54.5
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 1.8e-100 370.2 296 59.5
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 3.1e-100 369.4 348 54.9
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 3.1e-100 369.4 344 54.1
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 4.0e-100 369.0 311 55.9
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 3.4e-99 365.9 299 58.5
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 5.8e-99 365.2 353 54.1
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.3e-98 364.0 324 54.0
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 6.5e-98 361.7 305 58.0
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 8.4e-98 361.3 338 53.8
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 8.4e-98 361.3 350 54.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 8.4e-98 361.3 352 52.3
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.1e-97 360.9 306 55.9
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.1e-97 360.9 317 56.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.9e-97 360.1 313 57.2
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 9.3e-97 357.8 314 55.4
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 9.3e-97 357.8 325 54.5
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.6e-96 357.1 351 52.4
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 2.1e-96 356.7 312 56.1
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 2.7e-96 356.3 337 52.5
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.7e-96 356.3 358 50.8
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 6.0e-96 355.1 315 55.2
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.3e-95 354.0 329 53.8
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 1.3e-95 354.0 301 57.1
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 2.3e-95 353.2 304 55.9
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 3.9e-95 352.4 353 52.1
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.9e-95 352.4 297 56.6
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.9e-95 352.4 305 56.1
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 6.7e-95 351.7 342 53.8
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 3.3e-94 349.4 302 57.6
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 4.3e-94 349.0 303 55.4
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 2.1e-93 346.7 327 52.0
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 8.2e-93 344.7 309 53.4
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 8.2e-93 344.7 323 52.6
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 4.1e-92 342.4 356 48.0
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.2e-91 340.9 308 53.6
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 3.4e-91 339.3 308 58.4
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 5.9e-91 338.6 354 49.2
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 6.5e-90 335.1 276 59.8
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.1e-89 334.3 280 58.6
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 7.2e-89 331.6 303 54.1
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 7.2e-89 331.6 379 48.0
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 1.2e-88 330.9 336 50.0
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.2e-88 330.9 322 50.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.1e-88 330.1 315 52.4
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 4.6e-88 328.9 299 54.2
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.3e-87 327.4 344 50.3
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.3e-87 326.6 285 54.7
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 3.9e-87 325.9 317 52.4
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 8.7e-87 324.7 305 54.4
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.5e-86 323.9 302 54.6
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.3e-86 322.4 285 54.0
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 5.7e-86 322.0 364 46.7
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 2.8e-85 319.7 309 53.7
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.1e-81 307.8 244 60.7
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 5.5e-81 305.4 245 60.8
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.4e-81 304.7 353 47.9
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.6e-80 303.9 287 53.7
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 6.1e-80 302.0 245 62.0
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 3.9e-79 299.3 282 52.5
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 5.7e-78 295.4 380 43.4
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 1.1e-76 291.2 287 50.2
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 1.4e-76 290.8 300 50.0
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 2.0e-75 287.0 305 47.5
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 2.6e-67 260.0 311 47.9
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 2.6e-67 260.0 293 45.7
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.1e-64 248.8 190 63.2
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 1.1e-60 238.0 307 43.0
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.3e-58 231.1 328 40.5
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 4.7e-56 222.6 299 42.5
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 1.5e-54 217.6 219 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.3e-53 214.5 318 40.3
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 6.8e-47 192.2 275 41.5
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.2e-46 191.4 168 57.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.8e-45 186.8 372 34.9
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.6e-38 163.7 386 33.4
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 6.8e-31 139.0 225 39.6
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 3.7e-29 133.3 341 31.4
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.1e-25 121.7 108 50.0
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.7e-24 116.3 129 45.0
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.2e-23 112.8 173 37.6
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 2.0e-22 110.9 109 50.5
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 7.3e-17 92.4 133 40.6
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 7.6e-14 82.4 63 55.6


User provided reference genes

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