Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.4e-47 191.4 105 100.0
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 9.7e-42 173.3 105 84.8
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 6.3e-41 170.6 105 81.9
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 3.6e-36 154.8 105 84.8
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 7.4e-34 147.1 105 74.3
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.4e-32 142.9 105 74.3
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 7.0e-32 140.6 105 69.5
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 7.0e-32 140.6 105 69.5
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 5.0e-30 134.4 105 72.4
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 6.5e-30 134.0 105 66.7
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 9.7e-26 120.2 113 60.2
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.2e-23 113.2 109 63.3
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.2e-23 113.2 109 63.3
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.3e-22 109.8 105 61.9
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 8.8e-19 97.1 106 53.8
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 2.6e-18 95.5 106 52.8
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 7.5e-18 94.0 65 73.8
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 9.8e-18 93.6 107 49.5
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.7e-17 92.8 106 50.9
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 4.8e-17 91.3 111 47.7
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 8.3e-17 90.5 108 50.0
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.8e-16 89.4 55 78.2
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.4e-16 89.0 106 50.9
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 3.1e-16 88.6 107 49.5
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 4.1e-16 88.2 106 49.1
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 7.0e-16 87.4 114 43.9
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.2e-15 86.7 106 48.1
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.2e-15 86.7 107 47.7
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.2e-15 86.7 106 49.1
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.2e-15 86.7 105 49.5
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.6e-15 86.3 106 48.1
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.0e-15 85.9 105 46.7
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.0e-15 85.9 113 46.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.5e-15 85.1 104 46.2
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 4.5e-15 84.7 113 43.4
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 5.9e-15 84.3 54 75.9
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 5.9e-15 84.3 106 45.3
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 7.7e-15 84.0 107 44.9
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.0e-14 83.6 105 40.0
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.0e-14 83.6 106 46.2
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.7e-14 82.8 108 48.1
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.7e-14 82.8 106 43.4
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.7e-14 82.8 67 65.7
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.2e-14 82.4 116 46.6
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 5.0e-14 81.3 106 46.2
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 6.5e-14 80.9 109 45.9
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 8.5e-14 80.5 113 44.2
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 8.5e-14 80.5 109 45.9
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 8.5e-14 80.5 106 46.2
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.1e-13 80.1 52 76.9
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-13 80.1 108 41.7
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-13 80.1 108 41.7
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 1.1e-13 80.1 43 81.4
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 1.5e-13 79.7 59 66.1
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.5e-13 79.7 106 41.5
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.5e-13 79.7 106 41.5
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.9e-13 79.3 79 51.9
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 2.5e-13 79.0 66 65.2
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 3.2e-13 78.6 52 73.1
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 4.2e-13 78.2 104 44.2
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 5.5e-13 77.8 52 73.1
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 5.5e-13 77.8 104 44.2
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 7.2e-13 77.4 52 73.1
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 7.2e-13 77.4 65 56.9
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 7.2e-13 77.4 105 42.9
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 9.5e-13 77.0 55 70.9
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.2e-12 76.6 53 69.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.6e-12 76.3 53 73.6
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.7e-12 75.5 106 44.3
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 3.6e-12 75.1 108 41.7
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.7e-12 74.7 105 40.0
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 4.7e-12 74.7 43 79.1
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 8.0e-12 73.9 104 45.2
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 1.0e-11 73.6 105 44.8
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.0e-11 73.6 106 45.3
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 1.0e-11 73.6 60 60.0
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 1.0e-11 73.6 55 65.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.4e-11 73.2 43 69.8
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.4e-11 73.2 43 69.8
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 6.8e-11 70.9 44 77.3
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 1.2e-10 70.1 66 51.5
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 9.8e-10 67.0 48 64.6
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.3e-09 66.6 47 63.8
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 1.3e-09 66.6 47 63.8
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.3e-09 66.6 62 54.8
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.7e-09 66.2 60 50.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 3.7e-09 65.1 59 55.9
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.4e-08 63.2 48 60.4
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 2.4e-08 62.4 48 60.4
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 2.4e-08 62.4 42 66.7
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 3.1e-08 62.0 48 58.3
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.6e-07 59.7 48 58.3
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 2.0e-07 59.3 41 58.5


User provided reference genes

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