Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 0.0e+00 1389.4 706 100.0
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 0.0e+00 1294.6 697 94.0
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 0.0e+00 1215.3 701 87.7
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 0.0e+00 1188.7 698 86.4
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 0.0e+00 1177.5 698 85.0
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 0.0e+00 1154.4 696 83.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 0.0e+00 1148.3 698 83.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 0.0e+00 1132.9 724 80.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 0.0e+00 1119.0 644 87.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 0.0e+00 1095.1 755 75.0
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.0e-304 1048.1 706 76.9
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.5e-297 1024.6 743 73.2
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 9.4e-290 1000.0 689 73.1
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.5e-234 816.6 683 59.4
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.7e-230 803.1 688 57.4
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.2e-229 798.9 691 57.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.2e-228 797.0 682 58.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.1e-224 783.9 645 59.2
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.8e-224 783.1 687 57.9
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 4.4e-223 778.5 693 55.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.7e-222 776.5 691 56.4
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.4e-221 771.5 696 54.9
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.1e-218 763.8 689 54.9
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 7.3e-218 761.1 691 54.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 8.1e-217 757.7 691 54.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 8.9e-216 754.2 706 53.8
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.5e-215 753.4 702 54.3
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.5e-215 753.4 704 55.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.0e-215 753.1 694 54.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 3.4e-215 752.3 691 53.7
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.9e-214 749.2 655 56.3
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.8e-214 748.8 690 54.9
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.3e-211 740.3 653 55.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.7e-211 740.0 693 53.8
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 6.6e-211 738.0 695 53.8
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.3e-209 733.8 700 52.6
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 6.2e-209 731.5 687 52.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 3.8e-206 722.2 687 52.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.5e-204 715.7 699 52.4
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 4.6e-204 715.3 687 53.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.0e-204 714.9 696 53.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.7e-203 713.4 694 52.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.9e-203 712.2 682 51.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 5.1e-203 711.8 698 52.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 7.3e-202 708.0 689 54.1
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.6e-201 706.8 687 51.5
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 9.9e-199 697.6 734 49.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 6.4e-198 694.9 695 49.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 4.2e-197 692.2 698 48.9
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 7.1e-197 691.4 690 50.6
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.7e-196 689.5 689 49.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.2e-191 674.1 688 49.3
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.1e-189 667.5 693 49.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.9e-189 666.8 698 50.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 5.5e-189 665.2 699 50.1
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 5.5e-189 665.2 703 49.1
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 7.1e-189 664.8 693 47.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 3.5e-188 662.5 697 48.1
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 6.0e-188 661.8 698 47.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.0e-187 661.0 848 45.2
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.8e-187 660.2 700 47.6
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.7e-185 652.5 692 50.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 8.2e-185 651.4 691 47.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.1e-184 651.0 700 48.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 2.0e-183 646.7 689 49.1
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 7.6e-183 644.8 697 49.4
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 2.2e-182 643.3 684 47.2
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-181 641.0 696 49.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.4e-181 640.6 700 46.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.9e-181 640.2 694 48.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.2e-181 639.4 711 47.4
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.1e-181 638.3 693 49.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.1e-180 635.2 647 48.2
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 5.1e-179 632.1 736 47.3
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.1e-176 622.9 653 48.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.9e-175 618.6 698 47.3
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.5e-173 612.1 698 46.6
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.8e-169 599.7 647 49.3
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 8.2e-169 598.2 697 44.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.5e-165 586.6 597 51.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 7.4e-154 548.5 718 42.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 8.2e-153 545.0 698 42.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.5e-150 535.4 748 40.8
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 2.1e-148 530.4 638 42.6
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 3.1e-136 490.0 264 89.0
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.5e-133 481.1 588 45.2
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 7.2e-133 478.8 456 53.7
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.2e-130 471.5 647 39.6
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.5e-127 459.9 377 56.0
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.3e-126 458.0 683 39.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.1e-123 446.8 434 54.4
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 1.2e-122 444.9 454 50.0
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.4e-120 436.0 572 42.1
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.3e-117 426.8 613 39.3
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 7.3e-117 425.6 465 49.9
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.4e-115 421.4 695 36.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 2.3e-107 394.0 332 58.4
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.2e-98 365.2 612 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.4e-91 341.7 534 34.5
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-76 290.8 352 41.5
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.5e-74 283.5 317 47.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.4e-72 278.5 270 53.7
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.2e-57 228.0 280 44.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.5e-57 226.5 220 50.9
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 3.0e-54 217.6 261 43.7
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 6.7e-54 216.5 254 44.5
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-51 209.1 198 54.5
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-51 208.0 332 36.7
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.3e-44 185.7 283 42.8
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 2.1e-39 168.3 159 52.8
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.1e-37 162.5 514 27.8
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-35 154.5 328 30.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-35 153.3 345 31.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.1e-35 152.9 209 44.0
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.6e-34 152.1 228 37.3
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 2.9e-33 147.9 88 73.9
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-33 146.7 284 32.0
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-30 138.3 184 40.8
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-29 135.2 258 34.9
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-28 131.0 195 34.4
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.1e-27 127.9 171 42.7
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-27 126.7 330 31.5
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 3.8e-25 120.9 475 24.8
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.0e-25 120.6 258 31.4
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.5e-24 119.0 159 44.7
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.2e-24 117.5 143 41.3
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.4e-21 107.8 160 40.0
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.4e-21 107.5 278 28.8
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 5.7e-21 107.1 111 51.4
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.7e-20 105.5 435 23.4
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-17 94.7 137 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.8e-17 94.4 416 23.8
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-16 92.8 216 31.5
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.4e-14 85.9 64 60.9
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.4e-14 85.9 76 53.9
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.8e-14 85.5 145 33.8
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 1.5e-13 82.4 62 56.5
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.6e-13 81.6 104 43.3
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 3.7e-12 77.8 58 65.5
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 1.1e-11 76.3 128 38.3
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.4e-11 73.9 86 41.9
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 9.2e-11 73.2 148 30.4
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 4.6e-10 70.9 58 63.8
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-10 70.9 171 31.6
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-09 69.7 87 50.6
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.7e-09 68.9 56 51.8
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-09 68.2 87 49.4
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-09 67.0 173 28.3
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 8.6e-09 66.6 51 54.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-08 66.2 87 48.3
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.5e-08 65.1 81 44.4
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 3.6e-07 61.2 130 46.9
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.0e-07 60.1 82 46.3
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.1e-06 58.2 41 56.1
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.9e-06 56.6 41 53.7


User provided reference genes

Program Settings