Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 7.2e-167 590.5 296 100.0
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.3e-157 558.9 297 94.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.1e-154 550.1 297 94.6
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.4e-154 549.7 296 92.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 3.5e-153 545.0 296 92.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.5e-153 545.0 296 91.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.5e-153 544.7 297 92.3
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 2.2e-152 542.3 297 91.2
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.5e-152 540.4 297 90.9
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 3.6e-150 535.0 296 90.2
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 8.0e-150 533.9 297 91.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 8.0e-150 533.9 297 91.2
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.0e-150 533.9 297 91.2
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-144 516.2 294 88.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 6.5e-144 514.2 331 79.5
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 6.5e-136 487.6 347 75.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.9e-135 486.1 296 82.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 6.8e-125 451.1 264 86.7
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.5e-124 449.9 261 87.4
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.7e-121 439.1 296 74.3
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.1e-119 433.7 296 73.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.9e-119 433.0 296 73.6
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.6e-119 431.4 296 73.0
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.2e-118 430.3 296 73.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-118 430.3 297 73.1
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.8e-118 429.1 297 72.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 8.0e-118 427.6 258 82.9
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.0e-117 427.2 297 72.4
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 5.2e-117 424.9 296 70.9
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 5.8e-116 421.4 296 70.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.2e-115 419.5 296 72.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.1e-114 415.2 296 71.6
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.0e-113 412.9 299 70.9
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 2.0e-113 412.9 295 70.5
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.5e-113 412.1 298 69.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.5e-113 412.1 296 70.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.3e-112 409.5 297 70.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.3e-112 409.5 296 68.9
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 3.0e-112 409.1 297 71.4
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.9e-112 408.7 296 70.3
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.0e-112 408.3 297 69.4
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.5e-111 406.8 300 71.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 2.5e-111 406.0 300 71.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 69.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 69.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.5e-111 406.0 311 67.8
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 70.6
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.1e-110 402.9 297 67.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.8e-110 402.5 296 68.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.8e-110 402.5 298 67.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 6.2e-110 401.4 298 70.5
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.1e-109 399.1 299 66.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 4.0e-109 398.7 255 76.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 6.8e-109 397.9 284 71.1
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-108 396.7 297 69.7
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.5e-108 396.7 299 66.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.0e-108 396.4 331 63.7
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.6e-108 396.0 300 66.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.4e-108 395.2 274 70.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 4.4e-108 395.2 296 65.9
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 4.4e-108 395.2 259 74.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.7e-107 393.3 252 77.0
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.2e-107 392.9 296 68.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 2.9e-107 392.5 296 68.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 4.9e-107 391.7 250 74.4
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 4.9e-107 391.7 295 68.5
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 6.4e-107 391.3 299 66.2
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 6.4e-107 391.3 296 68.2
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.4e-106 389.4 255 75.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 4.1e-106 388.7 321 65.4
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 5.4e-106 388.3 252 76.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 7.1e-106 387.9 296 67.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.2e-105 387.1 295 68.5
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.6e-105 386.7 252 75.8
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.1e-105 386.3 299 67.2
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 2.7e-105 386.0 257 73.5
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 7.8e-105 384.4 233 79.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.0e-104 384.0 233 79.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.3e-104 382.9 309 64.7
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.3e-104 382.9 297 68.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 3.9e-104 382.1 298 66.4
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 6.6e-104 381.3 300 68.3
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.1e-103 380.6 297 66.0
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.1e-103 380.6 255 72.9
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.5e-103 379.4 297 65.7
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.5e-103 379.4 299 66.2
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.3e-103 379.0 296 65.9
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 5.6e-103 378.3 252 74.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 5.6e-103 378.3 295 66.8
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.6e-102 376.7 296 65.9
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.6e-102 376.7 255 72.2
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.8e-102 375.9 242 76.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 6.2e-102 374.8 255 72.5
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 6.2e-102 374.8 255 71.4
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.1e-101 374.0 367 56.1
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.2e-100 370.5 255 71.0
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.6e-100 369.4 255 71.4
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.4e-100 368.6 257 69.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 7.6e-100 367.9 285 66.3
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-99 366.7 299 63.5
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.2e-99 366.3 295 64.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.9e-99 365.2 299 62.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 8.4e-99 364.4 221 80.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 8.4e-99 364.4 296 64.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 7.8e-97 357.8 295 65.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.1e-96 355.1 283 64.7
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.4e-93 347.1 224 74.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.4e-93 347.1 243 70.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.1e-93 345.9 301 63.8
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.4e-92 342.4 237 70.5
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.8e-92 341.7 250 67.2
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.6e-92 341.3 203 81.3
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 8.4e-91 337.8 226 73.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-89 334.0 284 61.6
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.1e-85 320.9 223 69.1
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 4.0e-85 318.9 227 66.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.9e-85 318.2 256 62.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 4.5e-84 315.5 222 67.6
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 4.5e-84 315.5 255 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.3e-80 303.1 210 69.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 6.7e-80 301.6 261 61.7
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.3e-79 298.9 246 61.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 5.6e-79 298.5 202 72.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.0e-67 261.2 287 51.9
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.5e-66 256.5 224 56.7
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 9.3e-66 254.6 230 56.5
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.5e-65 252.7 245 49.8
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.9e-58 230.3 142 79.6
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.8e-56 223.8 214 52.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.8e-56 223.8 214 52.3
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 5.1e-56 222.2 142 76.1
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.7e-54 216.1 425 36.0
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.5e-52 209.1 133 75.2
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-50 204.5 237 44.3
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.1 237 43.9
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.2e-49 201.1 187 54.5
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 9.7e-47 191.4 231 43.3
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.4e-45 186.8 138 69.6
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-44 184.5 160 58.1
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 7.4e-39 165.2 112 74.1
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.8e-37 160.6 97 82.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.6e-36 157.5 125 60.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.8e-35 152.9 97 80.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.8e-32 144.1 109 63.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.3e-30 137.9 118 59.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 4.2e-26 122.9 92 70.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.5e-26 122.5 101 66.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.7e-22 110.9 156 44.9
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 7.0e-21 105.5 123 50.4
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-18 97.8 67 70.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.7e-14 84.3 77 53.2
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.0e-08 63.2 176 33.5


User provided reference genes

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