Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-268 929.5 460 100.0
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-268 929.5 460 100.0
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.2e-254 881.3 461 95.2
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 9.2e-254 879.8 462 94.8
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.7e-245 851.7 461 91.1
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 3.0e-244 848.2 467 90.4
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.2e-240 836.3 451 91.8
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.1e-234 815.5 460 88.0
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.8e-234 815.1 460 88.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.6e-234 814.7 460 87.8
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-233 813.1 460 87.8
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 3.3e-227 791.6 460 84.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.5e-219 765.4 451 83.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.1e-203 713.4 427 79.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 6.3e-202 707.6 449 77.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.2e-202 707.2 425 80.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 9.0e-201 703.7 440 79.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-199 699.9 430 79.3
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.2e-199 699.1 433 76.4
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.8e-199 698.4 427 78.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.4e-198 696.4 429 77.6
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.2e-198 694.1 425 78.6
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.1e-197 692.6 429 77.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 1.0e-196 690.3 429 77.2
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 2.3e-196 689.1 440 75.2
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.3e-196 689.1 436 76.6
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.9e-196 688.3 430 77.9
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.9e-196 688.3 430 77.9
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 9.7e-195 683.7 437 76.7
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.4e-193 679.9 425 76.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 4.1e-193 678.3 432 76.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.9e-193 677.6 431 76.3
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 6.9e-193 677.6 426 76.3
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 6.9e-193 677.6 425 76.9
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.0e-192 676.0 433 74.1
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-192 674.9 443 72.7
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.9e-192 674.5 437 74.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.9e-191 672.2 435 73.8
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.0e-191 671.4 431 74.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.9e-190 669.5 441 72.1
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-190 669.5 443 72.5
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 3.2e-190 668.7 444 71.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 4.2e-190 668.3 439 73.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 9.4e-190 667.2 468 70.7
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.1e-189 666.0 444 73.4
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 4.6e-189 664.8 440 72.0
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 4.6e-189 664.8 453 70.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 6.1e-189 664.5 445 73.3
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 7.9e-189 664.1 435 73.1
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.4e-188 663.3 427 74.5
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.8e-188 662.9 443 71.8
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.3e-188 662.5 441 73.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 3.0e-188 662.1 431 74.0
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 3.0e-188 662.1 425 75.1
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 3.0e-188 662.1 438 73.1
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.9e-188 661.8 425 73.9
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 6.7e-188 661.0 431 73.5
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-187 660.2 431 73.5
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-187 660.2 453 70.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-187 660.2 453 70.2
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.5e-187 659.8 438 71.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.5e-187 659.8 427 74.0
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.3e-187 658.7 440 71.1
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.3e-187 658.7 440 71.1
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 4.3e-187 658.3 438 73.1
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.3e-187 658.3 434 74.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 5.7e-187 657.9 439 72.7
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 7.4e-187 657.5 432 72.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 9.7e-187 657.1 443 71.1
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.2e-186 656.0 439 71.8
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.7e-186 655.2 440 70.9
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 8.2e-186 654.1 446 70.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-185 653.7 439 72.4
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.1e-185 653.7 447 71.6
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.4e-185 653.3 443 71.1
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.4e-185 653.3 439 71.3
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.4e-185 653.3 447 70.5
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.4e-185 652.5 427 73.1
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.4e-185 652.5 452 71.9
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.1e-185 652.1 425 73.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 4.1e-185 651.7 435 74.0
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.1e-185 651.7 441 71.7
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 4.1e-185 651.7 424 74.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.2e-184 650.2 452 70.1
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.0e-184 649.4 443 70.2
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.0e-183 647.1 425 73.6
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-183 646.7 433 72.1
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 453 68.9
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 2.2e-183 646.0 436 71.1
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 8.5e-183 644.0 428 71.7
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.9e-182 642.9 450 67.8
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.9e-182 642.9 455 68.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.5e-182 642.5 447 70.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.5e-182 642.5 439 70.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.2e-182 641.0 410 76.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 7.9e-181 637.5 432 69.4
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 7.9e-181 637.5 431 71.7
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.4e-180 636.7 423 73.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.8e-180 636.3 440 70.7
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.9e-180 635.2 441 69.8
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.1e-179 633.6 451 68.3
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.7e-178 629.8 408 74.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.2e-178 629.4 426 72.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.2e-178 627.5 446 68.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.1e-177 627.1 446 68.4
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 3.1e-177 625.5 436 70.2
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.2e-176 623.6 417 73.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.6e-176 623.2 428 70.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.5e-176 621.7 445 67.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.5e-176 621.7 444 68.0
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 5.9e-176 621.3 437 69.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 7.7e-176 620.9 434 69.1
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-175 620.2 438 68.9
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.7e-175 619.8 437 68.9
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.8e-175 618.6 434 68.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.8e-175 618.6 428 70.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-174 617.1 428 69.9
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.9e-174 616.3 435 68.5
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 7.2e-174 614.4 428 69.4
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 9.4e-174 614.0 417 72.4
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 9.4e-174 614.0 442 67.2
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 2.7e-173 612.5 429 68.3
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 3.6e-173 612.1 428 68.5
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.7e-173 611.7 457 64.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.0e-171 606.3 427 68.9
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.4e-171 605.1 395 72.2
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.7e-171 604.7 444 66.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 9.7e-171 604.0 423 69.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.2e-170 600.9 445 66.5
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.8e-169 599.7 423 69.3
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 3.5e-168 595.5 450 64.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.5e-168 595.5 424 68.9
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 6.5e-167 591.3 451 63.6
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 8.5e-167 590.9 436 65.4
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 3.2e-166 589.0 367 75.5
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.2e-166 587.8 426 67.1
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.8e-164 583.2 361 80.1
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.0e-164 582.4 388 72.2
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 8.8e-164 580.9 386 72.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.5e-163 577.8 365 74.5
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.7e-162 575.5 429 66.7
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-160 569.7 386 71.0
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.4e-147 525.8 374 67.9
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 4.9e-146 521.9 441 60.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 9.5e-142 507.7 450 59.6
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-141 506.9 421 59.6
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.5e-139 498.0 429 58.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.0e-135 486.1 419 56.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.9e-135 485.7 420 57.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.0e-124 449.1 425 54.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 5.8e-115 418.7 316 63.9
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.1e-113 414.5 283 71.4
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 4.5e-107 392.5 425 48.5
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.3e-100 369.0 273 66.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 6.7e-95 352.1 436 43.8
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 2.5e-94 350.1 414 44.4
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.1e-92 343.2 230 70.0
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 4.5e-91 339.3 231 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.4e-84 317.0 366 45.4
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.8e-77 293.5 272 60.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 6.5e-66 255.8 145 80.7
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 3.6e-56 223.4 152 72.4
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-44 183.7 113 77.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.0e-39 167.2 127 63.0
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.9e-37 159.8 93 76.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 6.3e-37 159.5 439 28.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.4e-28 131.7 81 74.1
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 7.0e-20 102.8 84 57.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 4.0e-15 87.0 64 64.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.2e-14 85.5 78 52.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.5e-09 67.8 66 50.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.6e-08 65.1 196 29.1
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 8.9e-07 59.3 226 24.3
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.9e-07 59.3 43 62.8
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.0e-06 58.2 43 60.5


User provided reference genes

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