Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G17970 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 1.4e-140 503.1 270 100.0
Carub.0001s1767 Capsella rubella HOM05D000187 ORTHO05D000230 4.2e-89 332.0 257 73.2
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 3.2e-81 305.8 255 74.5
Sp1g16030 Schrenkiella parvula HOM05D000187 ORTHO05D000230 4.3e-78 295.4 263 69.6
Thhalv10007935m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 6.5e-74 281.6 255 67.1
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 3.6e-72 275.8 259 69.1
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 2.3e-71 273.1 248 70.2
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 1.5e-70 270.4 259 68.3
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 3.5e-67 259.2 259 66.8
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 1.3e-66 257.3 259 66.0
Aa31LG7G3050 Aethionema arabicum HOM05D000187 ORTHO05D000230 6.8e-55 218.4 278 54.7
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 5.7e-46 188.7 275 52.0
Sp5g28950 Schrenkiella parvula HOM05D000187 ORTHO05D000230 1.7e-42 177.2 268 51.5
CARHR066830 Cardamine hirsuta HOM05D000187 ORTHO05D000230 4.2e-41 172.6 265 48.7
Thhalv10018747m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 4.2e-41 172.6 262 52.3
Carub.0002s2051 Capsella rubella HOM05D000187 ORTHO05D000230 9.5e-41 171.4 261 51.3
AT1G73760 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 2.3e-39 166.8 266 50.4
AL2G33570 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 4.4e-38 162.5 261 49.4
Aa31LG4G4090 Aethionema arabicum HOM05D000187 ORTHO05D000230 8.3e-37 158.3 231 54.5
BcaB03g15727 Brassica carinata HOM05D000187 ORTHO05D000230 2.0e-30 137.1 256 43.4
C06p47910 Brassica napus HOM05D000187 ORTHO05D000230 2.0e-30 137.1 260 46.5
A07p39620 Brassica napus HOM05D000187 ORTHO05D000230 5.8e-30 135.6 262 47.3
BraA07t31511Z Brassica rapa HOM05D000187 ORTHO05D000230 5.8e-30 135.6 262 47.3
BolC6t39826H Brassica oleracea HOM05D000187 ORTHO05D000230 1.4e-28 131.0 262 46.2
A07p29680 Brassica napus HOM05D000187 ORTHO05D000230 3.9e-26 122.9 252 40.1
C06p33860 Brassica napus HOM05D000187 ORTHO05D000230 3.3e-25 119.8 245 42.4
BcaB03g15081 Brassica carinata HOM05D000187 ORTHO05D000230 9.5e-25 118.2 245 43.3
BolC6t38499H Brassica oleracea HOM05D000187 ORTHO05D000230 1.2e-24 117.9 245 42.4
BraA07t30608Z Brassica rapa HOM05D000187 ORTHO05D000230 8.1e-24 115.2 236 40.7
Glyma.08G049400 Glycine max HOM05D000187 ORTHO05D000230 2.3e-18 97.1 271 32.5
Prupe.5G225100 Prunus persica HOM05D000187 ORTHO05D000230 2.3e-18 97.1 267 37.5
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 3.0e-18 96.7 273 33.7
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 5.1e-18 95.9 264 33.7
Cpa.g.sc3.461 Carica papaya HOM05D000187 ORTHO05D000230 2.1e-16 90.5 200 39.5
RcHm_v2.0_Chr7g0179401 Rosa chinensis HOM05D000187 ORTHO05D000230 2.8e-16 90.1 257 34.2
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 3.6e-16 89.7 251 39.8
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 4.7e-16 89.4 282 37.2
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 6.2e-16 89.0 275 36.7
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 1.1e-15 88.2 259 30.5
MELO3C002110.2 Cucumis melo HOM05D000187 ORTHO05D000230 1.4e-15 87.8 260 30.0
MD06G1220700 Malus domestica HOM05D000187 ORTHO05D000230 1.4e-15 87.8 263 36.1
MD14G1230200 Malus domestica HOM05D000187 ORTHO05D000230 3.1e-15 86.7 266 35.3
Phvul.002G325200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 4.0e-15 86.3 259 28.6
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 5.2e-15 85.9 278 36.7
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 5.2e-15 85.9 282 32.6
VMungo0464G0328 Vigna mungo HOM05D000187 ORTHO05D000230 5.2e-15 85.9 252 31.7
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 8.9e-15 85.1 279 36.9
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 8.9e-15 85.1 285 36.1
VMungo0251G2579 Vigna mungo HOM05D000187 ORTHO05D000230 4.4e-14 82.8 260 28.8
Glyma.05G241900 Glycine max HOM05D000187 ORTHO05D000230 5.8e-14 82.4 197 35.0
ClCG04G010890 Citrullus lanatus HOM05D000187 ORTHO05D000230 7.6e-14 82.0 258 32.2
Phvul.004G153501 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 7.6e-14 82.0 249 29.7
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 3.7e-13 79.7 246 31.7
arahy.Tifrunner.gnm1.ann1.P10SDX Arachis hypogaea HOM05D000187 ORTHO05D000230 6.4e-13 79.0 256 34.4
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.1e-12 78.2 184 33.7
CSS0000068 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 1.9e-12 77.4 247 37.2
TWI81G0466 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 1.9e-12 77.4 257 38.1
FvH4_5g16700 Fragaria vesca HOM05D000187 ORTHO05D000230 4.1e-12 76.3 251 33.1
FAN18G3138 Fragaria x ananassa HOM05D000187 ORTHO05D000230 4.1e-12 76.3 251 30.7
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 4.1e-12 76.3 203 37.4
CiPaw.16G089300 Carya illinoinensis HOM05D000187 ORTHO05D000230 5.4e-12 75.9 263 30.0
Glyma.09G180300 Glycine max HOM05D000187 ORTHO05D000230 5.4e-12 75.9 252 34.9
C01p42780 Brassica napus HOM05D000187 ORTHO05D021900 9.2e-12 75.1 75 53.3
Lalb_Chr14g0370951 Lupinus albus HOM05D000187 ORTHO05D000230 9.2e-12 75.1 249 34.9
Lj4g0024779 Lotus japonicus HOM05D000187 ORTHO05D000230 1.2e-11 74.7 193 34.2
Lalb_Chr09g0330701 Lupinus albus HOM05D000187 ORTHO05D000230 1.6e-11 74.3 230 34.8
QL10p026760 Quercus lobata HOM05D000187 ORTHO05D000230 2.1e-11 73.9 266 37.6
FAN04G1576 Fragaria x ananassa HOM05D000187 ORTHO05D000230 2.7e-11 73.6 256 30.1
FAN13G0080 Fragaria x ananassa HOM05D000187 ORTHO05D000230 2.7e-11 73.6 255 32.2
FAN08G2200 Fragaria x ananassa HOM05D000187 ORTHO05D000230 3.5e-11 73.2 251 31.5
Lj5A153T49 Lonicera japonica HOM05D000187 ORTHO05D000230 4.6e-11 72.8 247 30.0
C09p15090 Brassica napus HOM05D000525 ORTHO05D021900 6.0e-11 72.4 118 42.4
BolC9t54415H Brassica oleracea HOM05D000525 ORTHO05D021900 6.0e-11 72.4 118 42.4
arahy.Tifrunner.gnm1.ann1.35GK0Y Arachis hypogaea HOM05D000187 ORTHO05D000230 7.8e-11 72.0 260 32.7
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 1.3e-10 71.2 246 36.2
CSS0006855 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 3.0e-10 70.1 254 37.4
TPR.G28409 Trifolium pratense HOM05D000187 ORTHO05D000230 3.0e-10 70.1 236 31.4
Medtr8g106240 Medicago truncatula HOM05D000187 ORTHO05D000230 6.6e-10 68.9 216 31.0
Cfa019728 Carpinus fangiana HOM05D000187 ORTHO05D000230 8.6e-10 68.6 271 31.4
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 1.1e-09 68.2 261 30.7
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 1.5e-09 67.8 265 28.7
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 2.5e-09 67.0 264 28.0
Eucgr.B00829 Eucalyptus grandis HOM05D000187 ORTHO05D000230 3.3e-09 66.6 262 35.9
TWI60G1712 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 3.3e-09 66.6 270 34.1
Potri.015G043900 Populus trichocarpa HOM05D000187 ORTHO05D000230 4.3e-09 66.2 264 34.1
BcaC08g45623 Brassica carinata HOM05D000187 ORTHO05D000230 5.6e-09 65.9 104 45.2
C01p24120 Brassica napus HOM05D006190 ORTHO05D041313 2.1e-08 63.9 51 70.6
arahy.Tifrunner.gnm1.ann1.UBBI2A Arachis hypogaea HOM05D000187 ORTHO05D000230 2.8e-08 63.5 140 37.1
DCAR_023221 Daucus carota HOM05D000187 ORTHO05D000230 2.8e-08 63.5 192 31.8
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 3.6e-08 63.2 220 35.9
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 3.6e-08 63.2 188 36.7
Nitab4.5_0006894g0010 Nicotiana tabacum HOM05D000187 ORTHO05D000230 4.7e-08 62.8 269 34.6
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 6.2e-08 62.4 185 40.5
arahy.Tifrunner.gnm1.ann1.X8S18P Arachis hypogaea HOM05D000187 ORTHO05D000230 8.1e-08 62.0 206 33.0
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 1.1e-07 61.6 136 38.2
Cc04_g06840 Coffea canephora HOM05D000187 ORTHO05D000230 1.4e-07 61.2 282 30.5
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.4e-07 61.2 269 34.2
Peaxi162Scf00683g00346 Petunia axillaris HOM05D000187 ORTHO05D000230 1.4e-07 61.2 190 32.1
Dinv12227 Davidia involucrata HOM05D000187 ORTHO05D000230 1.8e-07 60.8 260 26.5
Hma1.2p1_1283F.1_g272850 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 1.8e-07 60.8 108 36.1
Solyc03g118840.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 2.4e-07 60.5 273 33.0
Ca_17238_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 3.1e-07 60.1 185 34.1
Dinv17509 Davidia involucrata HOM05D000187 ORTHO05D000230 3.1e-07 60.1 256 29.7
PGR083G2722 Punica granatum HOM05D000187 ORTHO05D000230 3.1e-07 60.1 260 30.8
Sabra15G0041300 Salix brachista HOM05D001562 ORTHO05D000230 3.1e-07 60.1 190 31.1
Sopen03g037790 Solanum pennellii HOM05D000187 ORTHO05D000230 3.1e-07 60.1 279 32.6
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 6.8e-07 58.9 256 37.1
CiPaw.15G135800 Carya illinoinensis HOM05D000187 ORTHO05D000230 8.9e-07 58.5 179 34.6
Nn4g23961 Nelumbo nucifera HOM05D000187 ORTHO05D000230 8.9e-07 58.5 262 28.2
vmacro16433 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 8.9e-07 58.5 205 35.6
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 1.2e-06 58.2 195 29.2
EL10Ac5g11483 Beta vulgaris HOM05D000187 ORTHO05D000230 1.5e-06 57.8 254 34.3
A06p15940 Brassica napus HOM05D000187 ORTHO05D103631 1.5e-06 57.8 108 42.6
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 2.0e-06 57.4 47 68.1
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 3.4e-06 56.6 246 25.2
Actinidia35102 Actinidia chinensis HOM05D000187 ORTHO05D000230 4.4e-06 56.2 227 29.5
Migut.D01604 Erythranthe guttata HOM05D000187 ORTHO05D000230 4.4e-06 56.2 203 29.1
HanXRQChr17g0559771 Helianthus annuus HOM05D000187 ORTHO05D000230 4.4e-06 56.2 230 31.3
Medtr6g082620 Medicago truncatula HOM05D000187 ORTHO05D000230 9.9e-06 55.1 147 34.0
Psat7g005520 Pisum sativum HOM05D000187 ORTHO05D000230 9.9e-06 55.1 189 32.3


User provided reference genes

Program Settings