Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 1.8e-145 519.6 345 100.0
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 3.2e-134 482.3 345 87.5
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.7e-125 452.6 348 84.2
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 2.9e-119 432.6 348 80.7
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 5.3e-113 411.8 349 86.2
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 2.9e-111 406.0 348 85.9
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 6.1e-109 398.3 352 77.8
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.4e-105 387.1 351 77.2
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 1.8e-105 386.7 347 76.9
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 1.6e-104 383.6 347 76.4
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 4.5e-104 382.1 343 79.9
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 4.5e-104 382.1 347 77.2
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 4.5e-104 382.1 347 76.9
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 3.0e-100 369.4 345 68.1
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 4.4e-99 365.5 349 73.6
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 2.8e-98 362.8 343 75.2
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 2.4e-97 359.8 349 71.6
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 5.5e-94 348.6 343 75.5
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 8.3e-90 334.7 344 77.6
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 9.5e-86 321.2 349 75.6
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-74 284.3 350 69.1
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 4.9e-74 282.3 357 66.4
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 4.6e-72 275.8 346 68.8
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 1.7e-71 273.9 343 68.8
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 4.0e-68 262.7 352 57.7
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 2.0e-67 260.4 346 70.8
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 2.0e-67 260.4 346 70.8
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 7.5e-67 258.5 352 59.9
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 6.4e-66 255.4 344 55.5
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 1.1e-65 254.6 344 55.5
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 1.9e-65 253.8 346 56.9
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 1.9e-65 253.8 343 66.2
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 2.3e-63 246.9 352 62.8
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 4.3e-62 242.7 345 56.2
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 5.6e-62 242.3 352 65.9
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 7.3e-62 241.9 353 66.0
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 7.5e-59 231.9 391 45.3
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 3.7e-58 229.6 393 45.3
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.9e-57 227.3 354 58.2
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 1.9e-57 227.3 369 47.2
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 3.9e-55 219.5 386 46.1
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 8.6e-55 218.4 387 44.7
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 1.1e-54 218.0 391 50.6
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 1.1e-54 218.0 386 46.4
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 3.3e-54 216.5 387 43.7
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 3.3e-54 216.5 390 44.1
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 4.3e-54 216.1 388 54.6
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 9.5e-54 214.9 387 43.4
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.2e-53 214.5 362 43.9
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 1.2e-53 214.5 389 56.3
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 3.6e-53 213.0 378 55.6
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 8.1e-53 211.8 378 43.1
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.4e-52 211.1 349 46.4
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 3.1e-52 209.9 368 50.8
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 2.6e-51 206.8 383 48.0
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 3.4e-51 206.5 386 47.9
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 7.6e-51 205.3 375 52.8
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 7.6e-51 205.3 392 42.3
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 9.9e-51 204.9 386 48.7
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 3.8e-50 203.0 377 44.3
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 8.4e-50 201.8 389 48.8
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 2.4e-49 200.3 389 53.7
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.2e-49 199.9 388 48.5
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 7.1e-49 198.7 378 49.2
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.2e-48 198.0 387 46.0
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 1.2e-48 198.0 389 50.9
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.6e-48 197.6 375 41.6
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.6e-48 197.6 375 41.6
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.6e-48 197.6 390 47.7
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 2.1e-48 197.2 393 52.4
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 1.0e-47 194.9 371 42.3
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.0e-47 194.9 382 41.4
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 1.3e-47 194.5 391 52.2
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.7e-47 194.1 372 41.1
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 2.3e-47 193.7 393 52.2
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 6.6e-47 192.2 369 52.8
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 6.6e-47 192.2 385 51.9
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-46 191.4 388 50.8
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 5.6e-46 189.1 382 49.5
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 9.6e-46 188.3 371 51.2
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 9.6e-46 188.3 380 51.1
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.2e-45 188.0 381 51.2
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 4.7e-45 186.0 385 44.4
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 8.1e-45 185.3 340 42.4
BcaB03g16595 Brassica carinata HOM05D004052 ORTHO05D004694 1.4e-44 184.5 151 73.5
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 2.4e-44 183.7 442 42.8
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 4.0e-44 183.0 392 53.8
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 5.2e-44 182.6 374 48.7
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 9.0e-44 181.8 389 50.9
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 9.0e-44 181.8 384 52.3
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 9.0e-44 181.8 374 52.4
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.0e-43 180.6 366 44.8
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 2.6e-43 180.3 371 55.5
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.4e-43 179.9 365 39.7
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 4.4e-43 179.5 384 40.9
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 7.6e-43 178.7 389 44.2
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 9.9e-43 178.3 373 55.2
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 1.7e-42 177.6 380 53.4
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 3.8e-42 176.4 375 49.6
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 6.4e-42 175.6 392 39.5
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.4e-42 175.6 381 54.6
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 8.4e-42 175.3 366 51.1
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-41 174.9 352 38.9
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 1.1e-41 174.9 375 40.0
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 2.4e-41 173.7 381 52.5
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 4.2e-41 172.9 367 38.7
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 5.4e-41 172.6 347 47.0
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 7.1e-41 172.2 363 49.9
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 4.6e-40 169.5 389 49.4
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 6.0e-40 169.1 433 43.9
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.0e-40 169.1 359 54.6
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 1.7e-39 167.5 359 52.1
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 2.3e-39 167.2 372 39.2
BcaB03g15049 Brassica carinata HOM05D004052 ORTHO05D004694 6.6e-39 165.6 126 79.4
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 8.7e-39 165.2 396 37.4
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 8.7e-39 165.2 386 47.4
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 1.9e-38 164.1 335 51.0
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 7.3e-38 162.2 393 38.4
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.3e-37 161.4 399 37.3
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 2.1e-37 160.6 382 37.7
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 2.8e-37 160.2 388 50.3
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 2.4e-36 157.1 366 49.2
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 3.1e-36 156.8 380 47.6
BcaB03g15566 Brassica carinata HOM05D004052 ORTHO05D004694 3.1e-36 156.8 116 78.4
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.0e-36 156.4 388 36.9
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 5.3e-36 156.0 383 37.3
BcaB03g15581 Brassica carinata HOM05D004052 ORTHO05D004694 6.9e-36 155.6 118 77.1
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.2e-35 154.8 376 35.6
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.5e-35 154.5 372 37.9
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 3.4e-35 153.3 392 36.2
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 4.5e-35 152.9 412 35.7
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 4.5e-35 152.9 374 47.9
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 1.3e-34 151.4 359 52.4
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.7e-34 151.0 359 52.4
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 8.4e-34 148.7 313 55.0
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.4e-33 147.9 420 34.5
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 3.2e-33 146.7 327 38.8
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 4.2e-33 146.4 393 45.3
BcaB03g15574 Brassica carinata HOM05D004052 ORTHO05D004694 4.2e-33 146.4 111 76.6
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.7e-32 143.7 390 35.6
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 2.7e-32 143.7 391 42.7
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.9e-30 137.5 353 38.5
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.7e-29 133.3 371 33.4
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.8e-28 131.0 361 41.3
BcaB03g15788 Brassica carinata HOM05D004052 ORTHO05D004694 3.1e-28 130.2 99 75.8
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 1.2e-27 128.3 315 39.4
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 3.8e-26 123.2 357 45.7
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 1.1e-25 121.7 314 43.6
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 8.7e-23 112.1 355 40.8
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 1.1e-22 111.7 353 34.3
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 3.3e-22 110.2 383 44.1
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.3e-21 108.2 92 66.3
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 3.1e-20 103.6 95 58.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.0e-18 98.6 363 36.4
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 1.0e-18 98.6 184 53.8
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 1.3e-18 98.2 346 39.3
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 4.6e-16 89.7 368 32.1
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 5.7e-14 82.8 172 37.8
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 3.7e-13 80.1 405 35.1
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 6.3e-13 79.3 312 31.1
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 4.1e-12 76.6 298 45.0
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 1.5e-11 74.7 392 30.1
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 3.4e-11 73.6 434 34.8
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 1.0e-07 62.0 86 51.2


User provided reference genes

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