Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 9.5e-50 199.9 103 100.0
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 4.0e-24 114.8 70 85.7
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 5.8e-23 110.9 70 82.9
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 2.9e-22 108.6 69 82.6
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 3.8e-22 108.2 69 81.2
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 3.2e-21 105.1 69 78.3
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 4.2e-21 104.8 69 78.3
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 7.1e-21 104.0 70 78.6
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 2.7e-20 102.1 70 77.1
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 3.5e-20 101.7 70 77.1
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 8.7e-19 97.1 69 72.5
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 1.2e-12 76.6 62 54.8
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 1.6e-12 76.3 62 54.8
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 2.7e-12 75.5 66 60.6
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 3.5e-12 75.1 71 56.3
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 6.6e-11 70.9 62 53.2
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 6.6e-11 70.9 45 64.4
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 1.5e-10 69.7 45 64.4
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 1.5e-10 69.7 67 52.2
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 1.9e-10 69.3 42 64.3
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 2.5e-10 68.9 62 56.5
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 2.5e-10 68.9 66 54.5
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 2.5e-10 68.9 45 66.7
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 4.3e-10 68.2 63 57.1
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.1e-09 65.9 68 47.1
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 2.1e-09 65.9 41 63.4
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 2.1e-09 65.9 57 59.6
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 3.6e-09 65.1 44 59.1
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 3.6e-09 65.1 42 64.3
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 3.6e-09 65.1 62 48.4
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 8.1e-09 63.9 66 48.5
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 1.4e-08 63.2 60 50.0
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 1.8e-08 62.8 48 60.4
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 3.1e-08 62.0 44 56.8
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 4.0e-08 61.6 84 45.2
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 5.3e-08 61.2 66 47.0
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 6.9e-08 60.8 36 69.4
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 9.0e-08 60.5 58 51.7
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 1.2e-07 60.1 42 57.1
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 1.2e-07 60.1 42 61.9
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 1.5e-07 59.7 42 59.5
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.5e-07 59.7 41 56.1
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 2.0e-07 59.3 55 54.5
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 2.0e-07 59.3 41 58.5
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 2.0e-07 59.3 36 66.7
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 2.0e-07 59.3 37 59.5
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 2.6e-07 58.9 48 52.1
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 3.4e-07 58.5 40 62.5
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 3.4e-07 58.5 65 46.2
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 7.6e-07 57.4 45 57.8
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.3e-06 56.6 62 48.4
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 1.3e-06 56.6 58 48.3
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.7e-06 56.2 62 48.4
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 1.7e-06 56.2 62 48.4
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 2.2e-06 55.8 62 46.8
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 2.9e-06 55.5 38 52.6
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.9e-06 54.7 47 51.1
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 4.9e-06 54.7 54 48.1
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 6.4e-06 54.3 42 57.1


User provided reference genes

Program Settings