Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 0.0e+00 1436.8 846 100.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 0.0e+00 1078.2 868 77.4
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.9e-277 958.7 878 68.6
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.9e-237 825.1 856 65.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 4.9e-237 825.1 879 63.9
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.4e-236 823.5 857 66.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 2.9e-205 719.5 881 61.3
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.3e-202 709.9 886 58.5
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 5.0e-197 692.2 880 57.5
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 8.8e-186 654.8 863 57.9
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 8.6e-181 638.3 919 55.0
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.7e-100 369.0 921 39.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.3e-99 368.6 865 40.7
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.2e-99 367.9 875 40.9
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 3.1e-98 364.0 894 39.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 5.3e-98 363.2 890 40.1
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 6.9e-98 362.8 872 40.4
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.2e-97 362.1 928 38.6
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-94 352.1 858 39.4
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.4e-92 343.6 853 39.3
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 8.0e-86 322.8 848 38.2
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 8.8e-85 319.3 854 37.9
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 8.2e-83 312.8 859 37.8
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.4e-69 268.9 947 38.0
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 6.8e-53 213.4 910 33.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 2.6e-44 184.9 894 30.5
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 6.4e-43 180.3 965 29.8
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 8.3e-43 179.9 881 28.5
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 4.1e-42 177.6 951 29.2
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-39 168.3 919 28.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.6e-38 165.6 888 28.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.1e-38 165.2 891 28.7
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 2.9e-35 154.8 927 28.6
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.9e-34 152.1 895 28.4
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.6e-33 149.1 920 27.0
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.1e-33 148.7 905 27.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 3.5e-33 147.9 921 28.9
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 7.8e-33 146.7 943 28.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 2.3e-32 145.2 958 27.3
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.5e-31 141.7 904 26.2
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 3.3e-31 141.4 905 27.7
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.2e-30 139.4 1000 27.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.8e-29 135.6 925 29.1
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.1e-29 134.8 924 28.4
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.0e-28 132.1 923 28.1
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 9.9e-28 129.8 94 81.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.7e-27 129.0 897 28.7
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.9e-27 128.3 914 28.6
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-27 128.3 461 30.6
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 4.9e-27 127.5 913 28.0
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 4.9e-27 127.5 943 27.7
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.1e-26 126.3 889 27.2
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.1e-26 126.3 912 28.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.4e-26 125.2 314 37.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.4e-26 125.2 903 28.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.2e-26 124.8 905 28.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 7.1e-26 123.6 461 29.9
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 9.3e-26 123.2 905 28.4
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.6e-25 122.5 953 27.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.1e-25 122.1 850 28.2
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.1e-25 122.1 978 25.8
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.7e-25 121.7 920 27.5
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 7.8e-25 120.2 834 26.6
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.3e-24 119.4 935 27.1
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.7e-24 119.0 893 25.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.0e-24 118.2 255 39.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.7e-24 116.7 916 26.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.1e-23 116.3 851 26.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.9e-23 115.5 910 26.9
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 4.8e-22 110.9 904 25.8
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.4e-21 109.4 909 26.7
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.1e-21 108.2 930 27.0
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 9.0e-21 106.7 871 26.5
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.5e-20 105.9 887 25.0
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 2.0e-20 105.5 945 27.6
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 4.5e-20 104.4 504 27.4
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 7.6e-20 103.6 954 26.2
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.3e-19 102.8 870 26.1
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.2e-19 102.1 441 27.0
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 4.9e-19 100.9 921 27.5
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-18 99.4 891 25.6
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.4e-18 99.4 918 25.3
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 2.4e-18 98.6 939 26.0
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.2e-18 97.8 899 26.0
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 4.2e-18 97.8 935 26.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.1e-17 95.5 900 25.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.7e-17 95.1 855 25.0
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 4.6e-17 94.4 942 24.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 4.6e-17 94.4 211 36.0
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 6.0e-17 94.0 903 26.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 6.0e-17 94.0 547 26.7
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.0e-16 93.2 916 27.4
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.0e-16 93.2 937 26.8
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.8e-16 92.4 234 33.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.0e-16 91.7 922 26.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 3.3e-15 88.2 291 34.0
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 3.3e-15 88.2 241 31.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.3e-15 87.8 884 24.8
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.6e-15 87.4 914 25.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 5.6e-15 87.4 838 27.2
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 7.4e-15 87.0 983 25.0
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 1.1e-13 83.2 980 25.1
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.8e-13 82.4 260 32.7
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.8e-13 82.4 882 24.7
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 7.6e-12 77.0 938 24.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 7.6e-12 77.0 927 26.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 6.4e-11 73.9 869 27.5
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 8.4e-11 73.6 936 23.9
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.1e-10 73.2 936 25.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.2e-10 71.6 868 25.2
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.2e-10 71.6 868 25.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.1e-10 70.5 136 41.2
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 9.3e-10 70.1 980 25.1
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.2e-09 69.7 199 34.7
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 3.5e-09 68.2 199 34.7
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.5e-09 68.2 829 25.0
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.0e-08 66.6 240 35.0
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-08 66.2 88 43.2
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.8e-08 65.9 215 30.2
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.8e-08 65.9 73 49.3
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.3e-08 65.5 873 22.5
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 3.0e-08 65.1 254 29.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 6.7e-08 63.9 983 25.8
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.5e-07 62.0 124 39.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 2.5e-07 62.0 330 30.6
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.5e-07 62.0 182 30.8
BcaC02g09043 Brassica carinata HOM05D004628 ORTHO05D005166 3.3e-07 61.6 71 56.3
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 5.6e-07 60.8 1009 25.2
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.4e-07 60.5 68 57.4
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.3e-06 59.7 905 27.1
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.3e-06 59.7 206 32.0
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 1.6e-06 59.3 227 31.7
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.8e-06 58.5 210 31.4
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 3.7e-06 58.2 174 29.9
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.7e-06 58.2 174 29.9
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.8e-06 57.8 72 47.2
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 6.2e-06 57.4 202 31.2
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 6.2e-06 57.4 183 31.1
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 6.2e-06 57.4 206 31.6
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 8.2e-06 57.0 153 32.7


User provided reference genes

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