Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.0e-122 443.4 216 100.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.6e-99 366.3 211 82.0
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.3e-97 358.6 211 81.5
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.4e-95 352.4 210 78.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.2e-89 333.6 213 73.2
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-89 332.8 218 71.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 3.7e-88 328.6 215 71.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 8.3e-88 327.4 215 71.6
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 8.3e-88 327.4 215 72.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.1e-87 327.0 215 70.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.4e-87 326.6 215 71.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.9e-85 318.9 216 71.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.8e-85 318.5 214 71.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.1e-84 317.0 216 70.8
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-84 316.6 214 69.2
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-84 315.8 214 71.5
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 4.2e-84 315.1 194 73.2
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 4.2e-84 315.1 194 73.2
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 9.4e-84 313.9 217 71.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-83 313.5 214 69.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.2e-83 313.5 214 69.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 6.1e-83 311.2 215 70.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.8e-82 307.8 239 64.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.6e-77 291.2 215 62.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 7.3e-76 287.7 238 61.8
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.6e-75 286.6 216 62.0
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.2e-71 272.3 195 61.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 9.2e-71 270.8 202 58.9
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.8e-70 267.7 223 55.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.5e-68 263.5 206 58.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 4.3e-68 261.9 210 58.6
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 9.5e-68 260.8 199 60.8
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.6e-67 258.8 196 58.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.6e-67 258.8 210 58.1
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.4e-66 256.9 200 58.0
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.8e-66 256.5 206 56.8
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.8e-66 256.5 204 57.4
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.1e-66 255.8 205 57.1
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.2e-65 253.8 207 56.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.6e-65 252.7 194 56.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.4e-65 251.9 184 60.3
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.4e-65 251.9 207 57.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 5.8e-65 251.5 194 56.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.3e-64 250.4 206 54.9
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.7e-64 250.0 205 57.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.9e-64 249.2 205 55.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.7e-64 248.8 209 55.0
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 8.3e-64 247.7 206 53.9
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.1e-63 247.3 210 52.4
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.4e-63 246.9 184 58.2
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.4e-63 246.9 209 56.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-63 246.9 212 53.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.4e-63 246.1 191 56.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.4e-63 246.1 200 57.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 5.4e-63 245.0 192 56.8
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 5.4e-63 245.0 209 53.1
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 7.0e-63 244.6 199 54.3
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 9.2e-63 244.2 192 57.3
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.6e-62 243.4 205 53.7
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.7e-62 242.7 194 55.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.7e-62 242.7 202 55.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 3.5e-62 242.3 200 58.5
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.5e-62 242.3 200 56.5
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.6e-62 241.9 189 56.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.6e-62 241.9 203 55.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 6.0e-62 241.5 186 58.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.0e-61 240.7 192 57.8
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.3e-61 240.4 192 56.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.7e-61 240.0 199 52.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 6.6e-61 238.0 205 51.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.5e-60 236.1 218 53.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 3.3e-60 235.7 202 51.0
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 9.5e-60 234.2 180 57.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.6e-59 233.4 203 51.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.8e-59 232.6 167 58.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.4e-58 230.3 200 53.5
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.4e-58 230.3 179 57.5
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.3e-58 229.6 204 52.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.1e-58 229.2 198 51.0
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.2e-58 228.4 194 54.6
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 5.2e-58 228.4 233 47.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 6.8e-58 228.0 194 56.2
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 2.0e-57 226.5 187 53.5
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.4e-57 225.3 210 49.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 7.5e-57 224.6 194 52.1
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 7.5e-57 224.6 194 52.1
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 9.8e-57 224.2 177 54.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.3e-56 223.8 208 49.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 2.2e-56 223.0 194 51.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.2e-56 223.0 220 50.9
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 3.7e-56 222.2 186 52.2
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.4e-56 221.5 185 53.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.3e-56 221.1 216 48.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-55 220.7 200 52.0
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.4e-55 220.3 194 50.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.9e-55 219.9 185 55.1
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.9e-55 219.9 204 49.0
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.9e-55 219.9 193 51.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 7.1e-55 218.0 191 53.9
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.6e-54 215.3 191 51.3
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.0e-54 214.9 198 49.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.7e-53 213.4 200 52.0
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.6e-52 208.4 211 49.3
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 7.3e-52 208.0 198 47.5
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.2e-51 207.2 144 59.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.6e-51 205.7 192 51.0
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-50 204.1 229 44.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 6.8e-50 201.4 178 52.2
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 5.8e-49 198.4 193 48.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 9.9e-49 197.6 163 54.0
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.9e-48 196.1 209 46.4
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.1e-47 194.1 167 52.7
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.4e-47 193.0 192 50.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.4e-47 193.0 183 50.3
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.7e-45 186.8 157 53.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.7e-43 178.7 214 43.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-42 177.2 143 55.2
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.1e-42 176.0 183 45.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 5.2e-42 175.3 114 63.2
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.6e-41 171.4 188 43.6
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.2e-40 169.9 191 44.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.2e-40 169.9 191 44.5
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.9e-40 169.5 177 45.8
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 4.2e-39 165.6 108 64.8
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.2e-39 165.6 247 39.7
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 9.3e-39 164.5 200 42.5
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.1e-38 163.3 227 39.6
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 9.6e-36 154.5 126 56.3
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 4.8e-35 152.1 152 49.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 5.3e-34 148.7 122 50.0
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.5e-25 119.0 133 49.6
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 5.8e-25 118.6 125 45.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.3e-21 107.5 74 58.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.6e-17 93.2 38 92.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.0e-16 91.3 97 49.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-16 90.9 49 71.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.1e-15 87.8 49 63.3
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 4.6e-14 82.4 95 46.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.0e-14 82.0 61 50.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 7.9e-14 81.6 58 58.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.1e-12 77.8 68 48.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.5e-12 77.4 56 57.1
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.7e-12 75.5 93 43.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.8e-11 73.2 79 49.4
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.1e-10 71.2 78 50.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.1e-10 69.3 93 39.8
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 5.3e-10 68.9 152 28.9
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 9.0e-10 68.2 72 48.6
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.4e-09 66.2 49 55.1
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.1e-06 57.0 52 53.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.6e-06 56.2 200 22.5


User provided reference genes

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