Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 4.4e-56 221.1 114 100.0
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 7.3e-51 203.8 114 90.4
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 3.2e-46 188.3 121 84.3
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 3.9e-44 181.4 119 83.2
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 8.6e-44 180.3 110 82.7
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.3e-43 178.3 116 81.0
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 7.3e-43 177.2 109 82.6
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 7.3e-43 177.2 109 82.6
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 9.5e-43 176.8 110 80.9
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 9.5e-43 176.8 120 81.7
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 2.3e-41 172.2 121 76.9
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 5.4e-38 161.0 119 70.6
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.9e-31 138.7 112 64.3
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 8.4e-31 137.1 111 66.7
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 3.2e-30 135.2 121 60.3
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 4.1e-30 134.8 112 64.3
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 7.1e-30 134.0 116 62.1
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 9.2e-30 133.7 113 63.7
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 7.8e-29 130.6 112 62.5
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 3.9e-28 128.3 111 60.4
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.1e-28 127.9 112 61.6
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 6.6e-28 127.5 91 71.4
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 1.1e-27 126.7 110 60.9
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.9e-27 125.9 111 61.3
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 3.6e-26 121.7 106 62.3
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.7e-26 121.3 101 64.4
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.8e-25 119.4 89 68.5
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.8e-25 119.4 97 68.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 2.4e-25 119.0 90 67.8
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 3.1e-25 118.6 94 67.0
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 3.1e-25 118.6 93 65.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 3.1e-25 118.6 98 61.2
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 4.0e-25 118.2 98 61.2
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 5.2e-25 117.9 101 58.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 8.9e-25 117.1 99 61.6
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.2e-24 116.7 101 61.4
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.0e-24 115.9 91 64.8
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.4e-24 115.2 91 64.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 3.4e-24 115.2 94 63.8
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.4e-24 114.8 91 63.7
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 5.8e-24 114.4 97 58.8
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 5.8e-24 114.4 97 60.8
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 5.8e-24 114.4 94 63.8
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 7.6e-24 114.0 108 57.4
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 7.6e-24 114.0 97 61.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.9e-24 113.6 91 62.6
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.3e-23 113.2 91 62.6
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.3e-23 113.2 101 58.4
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.3e-23 113.2 103 61.2
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 2.9e-23 112.1 88 63.6
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 2.9e-23 112.1 89 60.7
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 4.9e-23 111.3 100 58.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 6.4e-23 110.9 97 57.7
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.1e-22 110.2 89 60.7
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.1e-22 110.2 91 62.6
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.4e-22 109.8 89 59.6
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.4e-22 109.8 89 59.6
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 1.4e-22 109.8 99 59.6
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.4e-22 109.8 89 61.8
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.4e-22 109.8 104 53.8
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 1.9e-22 109.4 86 65.1
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 3.2e-22 108.6 102 58.8
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 5.4e-22 107.8 100 54.0
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.7e-21 105.5 93 55.9
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 2.7e-21 105.5 88 62.5
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.0e-20 103.6 99 53.5
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 5.1e-20 101.3 92 57.6
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 6.6e-20 100.9 101 53.5
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 8.7e-20 100.5 91 58.2
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.1e-19 100.1 91 56.0
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.1e-19 100.1 91 60.4
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 5.6e-19 97.8 88 60.2
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 5.6e-19 97.8 88 53.4
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 4.8e-18 94.7 93 52.7
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.4e-17 93.2 94 52.1
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 2.4e-17 92.4 93 51.6
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.4e-17 92.4 89 56.2
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.1e-17 92.0 94 55.3
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 4.0e-17 91.7 88 56.8
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.5e-16 89.7 92 53.3
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 7.6e-16 87.4 66 72.7
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 4.9e-15 84.7 87 56.3
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.1e-13 79.3 97 43.3
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 4.6e-13 78.2 83 53.0
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.0e-12 77.0 86 50.0
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 6.7e-12 74.3 96 49.0
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 2.0e-08 62.8 62 53.2


User provided reference genes

Program Settings