Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 7.6e-231 803.5 420 100.0
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.0e-190 670.2 433 84.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.3e-163 579.3 431 75.2
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 9.6e-149 530.8 423 72.3
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.3e-141 505.4 449 66.1
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.0e-135 485.0 450 64.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.7e-119 433.0 438 61.4
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 3.5e-119 432.6 439 61.7
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 6.0e-119 431.8 438 61.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-118 431.0 439 61.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 3.8e-113 412.5 426 59.4
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 3.8e-113 412.5 426 59.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.2e-108 396.7 422 57.6
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.8e-108 396.4 422 57.3
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.5e-106 390.6 421 58.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 6.3e-100 368.6 449 52.1
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 6.1e-95 352.1 445 51.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.0e-94 351.3 429 51.3
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.0e-94 349.7 430 51.4
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 3.0e-94 349.7 430 51.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.5e-93 347.4 446 50.2
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.7e-92 344.0 429 50.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.0e-90 337.0 425 52.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.9e-90 335.5 425 52.5
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.9e-90 335.5 444 49.3
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 7.7e-90 335.1 464 48.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.7e-89 334.0 434 52.5
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.2e-89 333.6 425 50.8
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 5.0e-89 332.4 434 52.3
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.2e-88 329.7 434 49.1
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.1e-87 325.5 465 46.5
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-86 323.9 434 52.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.4e-83 314.3 453 46.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 4.1e-83 312.8 450 46.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.6e-82 310.8 450 48.0
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.7e-82 308.5 448 46.7
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.3e-81 307.8 466 45.3
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 5.0e-81 305.8 457 47.3
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 7.2e-80 302.0 455 45.5
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 6.8e-78 295.4 465 44.3
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 8.8e-78 295.0 463 46.0
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.6e-77 293.5 394 48.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 9.8e-77 291.6 455 45.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 8.3e-76 288.5 466 44.2
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 8.3e-76 288.5 447 44.5
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.4e-75 287.7 471 43.3
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.8e-75 287.3 453 45.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 3.1e-75 286.6 450 43.1
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 5.9e-74 282.3 453 44.6
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.8e-73 279.6 454 43.2
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.3e-72 276.6 370 48.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 7.2e-72 275.4 457 42.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.6e-71 274.2 454 42.3
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.8e-71 273.5 451 44.1
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 6.1e-71 272.3 471 43.5
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.0e-70 271.6 479 41.3
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.8e-70 270.8 440 43.6
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.8e-70 270.8 440 43.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 3.0e-70 270.0 455 43.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 1.5e-69 267.7 352 45.7
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 2.6e-69 266.9 472 42.6
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.4e-69 266.5 428 43.9
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 9.8e-69 265.0 437 42.8
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.3e-68 264.6 417 44.4
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.8e-68 263.5 440 43.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 3.7e-68 263.1 353 47.3
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 8.3e-68 261.9 440 43.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.1e-67 259.6 385 46.0
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 4.1e-67 259.6 288 51.7
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.1e-67 259.6 270 55.6
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 7.0e-67 258.8 418 42.6
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 9.2e-67 258.5 313 50.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 4.5e-66 256.1 457 40.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 7.8e-66 255.4 428 41.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.3e-65 254.6 350 46.0
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 2.9e-65 253.4 435 43.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.9e-65 253.4 443 43.8
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.9e-65 253.4 441 43.8
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.0e-65 252.7 405 43.2
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.1e-64 251.5 384 46.9
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.9e-64 250.8 440 43.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 2.5e-64 250.4 378 45.8
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 2.5e-64 250.4 424 43.6
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.3e-64 250.0 441 43.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 9.5e-64 248.4 344 44.2
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 2.1e-63 247.3 229 59.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.4e-62 244.6 386 43.8
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.0e-62 243.4 438 41.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.0e-62 243.0 508 38.8
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.5e-61 241.1 531 38.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 3.4e-61 240.0 337 49.3
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 4.4e-61 239.6 345 47.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 9.8e-61 238.4 468 40.6
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 3.7e-60 236.5 356 43.0
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.4e-60 235.7 496 36.7
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 8.3e-60 235.3 244 54.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 8.3e-60 235.3 339 46.9
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 8.3e-60 235.3 329 45.9
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.2e-59 233.4 395 43.5
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 5.4e-59 232.6 345 44.1
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.0e-58 230.7 461 39.5
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.6e-57 225.7 353 42.5
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 6.6e-57 225.7 441 39.0
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.6e-57 225.3 423 42.8
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.1e-56 224.9 417 39.8
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.9e-56 224.2 349 44.7
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.5e-56 223.8 482 38.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 5.6e-56 222.6 425 40.0
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.6e-55 221.1 403 40.9
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.1e-55 220.7 417 39.1
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.8e-55 220.3 137 78.1
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.7e-55 219.5 470 38.1
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 6.2e-55 219.2 624 33.2
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 5.2e-54 216.1 403 40.7
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 6.8e-54 215.7 207 58.0
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 4.4e-53 213.0 366 40.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 4.4e-53 213.0 426 38.0
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 7.5e-53 212.2 347 43.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.7e-52 211.1 344 41.0
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 9.2e-51 205.3 427 37.2
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.2e-50 204.9 437 39.8
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.5e-50 203.4 112 89.3
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 6.0e-50 202.6 203 56.7
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 6.0e-50 202.6 396 38.1
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.9e-49 199.9 304 44.4
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 2.1e-47 194.1 251 50.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 8.1e-47 192.2 469 34.8
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 8.1e-47 192.2 469 34.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-45 187.2 116 79.3
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.6e-45 187.2 116 79.3
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.3e-44 184.9 445 37.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 4.1e-43 179.9 101 86.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 6.2e-39 166.0 415 35.9
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.0e-38 163.3 113 77.0
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.7e-36 157.9 95 80.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-36 157.9 296 37.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 3.3e-32 143.7 247 37.2
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 5.6e-32 142.9 131 55.7
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 9.6e-32 142.1 76 90.8
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 5.4e-27 126.3 286 35.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.9e-25 120.2 154 44.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.6e-24 116.3 64 85.9
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 2.2e-20 104.4 382 29.3
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 3.8e-20 103.6 66 77.3
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 9.3e-19 99.0 106 50.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.6e-18 96.7 94 55.3
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 8.7e-17 92.4 105 45.7
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.3e-16 90.1 61 72.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.7e-15 87.0 56 78.6
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 4.5e-13 80.1 328 32.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.3e-12 78.6 92 47.8
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.4e-12 76.3 268 28.7
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.9e-11 74.7 35 97.1
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 2.5e-08 64.3 35 74.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.4e-08 62.8 50 60.0
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.1e-07 61.2 77 45.5
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.8e-07 60.8 240 31.2
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.2e-07 59.7 67 50.7
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 8.2e-07 59.3 103 33.0
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.4e-06 58.5 105 32.4
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.9e-06 56.2 83 41.0


User provided reference genes

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