Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 0.0e+00 1276.9 706 100.0
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.4e-300 1034.6 710 83.9
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 1.1e-242 843.6 725 70.9
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.4e-237 825.9 713 69.1
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 8.4e-206 721.1 747 63.3
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 8.4e-206 721.1 733 64.0
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.2e-173 612.8 741 53.0
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.9e-172 608.2 764 54.6
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.1e-168 597.8 748 57.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 4.1e-168 595.9 739 58.5
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 2.2e-166 590.1 750 57.5
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 3.2e-165 586.3 746 58.0
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 4.8e-161 572.4 751 56.6
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 8.3e-145 518.5 694 56.5
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.9e-134 483.4 764 50.7
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.3e-110 404.1 595 49.4
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.8e-62 245.0 749 31.8
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.3e-61 240.7 771 32.0
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.7e-61 240.0 750 31.3
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 3.7e-60 237.3 733 32.2
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.3e-60 236.5 735 32.0
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.5e-58 231.9 802 31.7
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 7.7e-58 229.6 768 30.3
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.7e-57 228.4 761 31.5
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.2e-55 222.2 771 29.1
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.6e-55 221.9 724 31.4
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 4.6e-55 220.3 812 31.2
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.8e-54 218.4 761 30.7
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.3e-54 218.0 757 31.7
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.5e-53 215.3 752 30.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 2.6e-53 214.5 768 29.7
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.2e-52 211.5 760 29.3
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.1e-51 209.1 760 30.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.1e-51 207.6 758 29.4
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 4.5e-50 203.8 844 29.0
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 6.5e-49 199.9 888 28.2
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 5.5e-48 196.8 915 28.3
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.1e-47 194.9 746 29.5
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.1e-47 194.9 746 29.5
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.7e-47 194.5 778 29.0
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.3e-46 191.4 833 28.2
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 2.3e-46 191.4 739 28.6
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 3.0e-46 191.0 765 29.2
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 3.9e-46 190.7 759 29.1
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.9e-46 190.7 759 28.9
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 8.8e-46 189.5 919 25.8
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 3.3e-45 187.6 756 30.3
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 5.7e-45 186.8 744 27.8
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 9.7e-45 186.0 755 29.5
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-44 185.7 760 28.8
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.2e-44 184.9 770 29.0
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.8e-44 184.5 746 31.9
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 4.8e-44 183.7 688 29.5
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 3.1e-43 181.0 675 28.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 5.0e-41 173.7 829 28.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 8.5e-41 172.9 768 28.0
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.5e-40 172.2 840 26.9
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.5e-40 172.2 749 27.9
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.9e-40 171.8 650 31.1
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 5.5e-40 170.2 486 34.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 5.5e-40 170.2 768 28.0
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 9.4e-40 169.5 671 29.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.2e-39 169.1 693 30.3
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 4.7e-39 167.2 850 27.1
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 6.1e-39 166.8 664 28.0
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.3e-38 164.9 860 26.9
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.0e-38 164.1 659 30.7
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.2e-38 163.7 732 29.9
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 6.7e-38 163.3 726 27.4
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 8.8e-38 162.9 714 26.5
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.1e-37 162.5 842 26.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.5e-37 162.2 734 26.4
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 2.0e-37 161.8 835 26.9
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 3.3e-37 161.0 671 27.4
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 4.4e-37 160.6 659 27.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.4e-37 160.6 719 28.2
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.3e-36 159.1 159 58.5
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.2e-36 158.3 407 31.7
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.2e-36 158.3 729 27.7
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.8e-36 157.9 710 26.1
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 6.3e-36 156.8 739 26.0
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.4e-35 155.6 754 26.5
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 3.1e-35 154.5 773 28.2
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.1e-35 154.1 734 27.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 7.0e-35 153.3 648 28.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.7e-34 151.4 781 27.4
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 3.5e-34 151.0 714 27.3
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 7.7e-34 149.8 755 27.3
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.3e-33 149.1 738 26.0
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.7e-33 148.7 759 27.3
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.7e-33 148.7 780 26.9
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.8e-33 147.5 746 27.3
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.2e-32 144.4 790 25.9
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 5.5e-32 143.7 740 27.3
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 5.5e-32 143.7 529 27.6
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 6.1e-31 140.2 801 26.0
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 8.0e-31 139.8 745 26.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.0e-30 137.5 365 31.0
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 5.2e-30 137.1 717 25.8
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.7e-29 133.7 786 24.8
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.7e-28 131.0 694 28.5
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.4e-27 129.0 810 25.2
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.1e-27 127.5 944 26.6
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 7.0e-27 126.7 390 31.3
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.3e-25 122.5 91 68.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 1.7e-25 122.1 695 25.2
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.7e-25 122.1 351 32.2
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.9e-25 121.3 326 33.4
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 5.0e-25 120.6 487 30.2
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 2.5e-24 118.2 90 64.4
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.2e-24 117.9 597 25.5
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 7.2e-24 116.7 579 26.4
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.1e-23 115.2 927 24.2
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.8e-22 112.1 750 26.1
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.2e-22 110.5 608 26.2
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 4.4e-21 107.5 91 61.5
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 5.7e-21 107.1 813 25.3
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.3e-20 105.9 76 68.4
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 4.9e-20 104.0 88 63.6
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.3e-20 103.6 84 63.1
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 9.2e-19 99.8 672 23.5
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.6e-18 99.0 638 26.0
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 7.7e-18 96.7 88 59.1
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 3.8e-17 94.4 716 25.6
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.1e-16 92.8 93 53.8
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.3e-16 90.1 654 26.3
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.3e-16 90.1 943 22.5
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.1e-15 88.6 743 23.7
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.6e-15 87.8 94 55.3
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.0e-14 86.3 86 54.7
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.2e-14 84.0 85 51.8
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.6e-13 81.6 83 50.6
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 8.3e-12 76.6 70 54.3
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.4e-11 75.9 109 39.4
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.8e-11 75.5 97 45.4
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 4.1e-11 74.3 516 24.6
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.9e-10 70.5 398 25.1
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.5e-08 65.1 68 44.1
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 2.5e-08 65.1 137 36.5
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 2.8e-07 61.6 62 50.0
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 6.2e-07 60.5 681 23.5
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 8.0e-07 60.1 56 60.7
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 4.0e-06 57.8 733 24.7
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 5.2e-06 57.4 68 47.1


User provided reference genes

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