Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 9.5e-129 463.8 279 100.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 1.1e-116 423.7 279 93.5
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 4.8e-112 408.3 280 88.2
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 3.1e-111 405.6 281 81.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.3e-106 389.4 283 82.3
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 5.1e-106 388.3 280 83.6
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 4.9e-101 371.7 280 76.1
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 2.4e-100 369.4 240 84.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 2.4e-100 369.4 240 84.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-97 360.5 285 78.6
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 3.3e-97 359.0 282 74.5
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 9.6e-97 357.5 241 82.2
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.0e-94 349.7 282 81.2
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 4.2e-92 342.0 284 76.1
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.5e-86 323.6 284 75.4
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.5e-86 323.6 284 75.4
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 4.3e-81 305.4 231 74.5
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 9.1e-71 271.2 235 74.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 2.6e-70 269.6 188 79.8
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 7.7e-62 241.5 259 65.6
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.7e-61 240.4 274 54.4
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.5e-60 237.3 233 60.9
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 2.7e-59 233.0 180 76.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.1e-59 231.9 259 59.1
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 5.2e-58 228.8 158 79.7
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 6.7e-58 228.4 188 71.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.5e-57 227.3 268 56.0
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.0e-57 226.9 264 53.8
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.6e-57 226.5 266 53.4
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 5.7e-57 225.3 163 79.8
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 5.7e-57 225.3 266 60.5
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 7.5e-57 224.9 267 53.6
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 9.7e-57 224.6 261 55.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.7e-56 222.6 266 55.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 3.7e-56 222.6 264 56.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.8e-56 222.2 266 55.6
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 8.2e-56 221.5 264 54.9
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.8e-55 220.3 217 59.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.4e-55 219.9 219 58.4
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.0e-55 218.4 220 58.2
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.6e-54 217.2 266 50.8
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 7.7e-54 214.9 245 53.9
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.3e-53 214.2 220 58.2
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.5e-52 210.7 272 50.4
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 6.1e-51 205.3 219 54.3
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-50 204.1 261 55.6
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.3e-50 203.4 218 55.5
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.0e-50 203.0 244 51.2
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.0e-50 202.6 221 53.4
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 5.2e-50 202.2 215 54.9
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 5.2e-50 202.2 237 52.3
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 5.2e-50 202.2 193 60.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 6.8e-50 201.8 226 52.2
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.2e-49 201.1 219 52.5
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.2e-49 201.1 213 54.9
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.5e-49 200.7 220 54.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.0e-49 200.3 229 52.4
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 3.4e-49 199.5 274 52.6
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.4e-49 199.5 216 56.0
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 5.7e-49 198.7 266 55.6
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 9.8e-49 198.0 239 51.9
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.7e-48 197.2 212 56.1
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.7e-48 197.2 216 54.2
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.7e-48 197.2 188 59.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.8e-48 196.4 221 53.4
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 3.7e-48 196.1 214 53.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 4.8e-48 195.7 264 46.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.3e-48 195.3 194 56.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.4e-47 193.4 234 49.1
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-47 193.4 233 51.9
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.4e-47 193.4 233 51.9
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 3.1e-47 193.0 233 51.9
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 3.1e-47 193.0 217 52.5
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.4e-47 192.2 233 49.8
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 7.0e-47 191.8 217 54.4
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 9.1e-47 191.4 203 52.2
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 9.1e-47 191.4 234 52.1
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.2e-46 191.0 242 49.2
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.5e-46 189.1 220 52.3
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.3e-45 187.6 196 53.6
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.3e-45 187.6 232 55.2
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.7e-45 187.2 240 53.3
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.9e-45 186.4 219 52.5
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 5.0e-45 185.7 259 49.4
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 5.0e-45 185.7 217 52.1
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.5e-45 185.3 222 49.5
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 8.6e-45 184.9 245 51.0
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.5e-44 183.3 183 54.6
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 2.5e-44 183.3 236 47.5
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 7.2e-44 181.8 231 48.1
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 9.5e-44 181.4 233 48.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.2e-43 181.0 221 49.8
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.8e-43 179.9 218 49.1
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 3.6e-43 179.5 269 49.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 4.7e-43 179.1 221 52.5
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 4.0e-42 176.0 194 51.5
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.2e-42 175.6 200 51.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 6.8e-42 175.3 217 50.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.2e-41 174.5 175 56.0
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-41 173.7 114 85.1
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.6e-41 173.3 221 50.2
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 9.8e-41 171.4 216 50.0
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.3e-40 171.0 247 45.7
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.8e-40 169.9 218 50.9
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 6.3e-40 168.7 182 54.9
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 8.3e-40 168.3 187 52.4
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.8e-39 167.2 221 48.9
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 4.1e-39 166.0 217 47.0
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.5e-38 162.9 242 44.6
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 7.8e-38 161.8 165 55.8
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.3e-37 160.2 233 44.2
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-36 157.9 160 54.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 4.3e-36 156.0 213 46.5
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 5.6e-36 155.6 222 45.5
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 7.3e-36 155.2 177 53.7
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.8e-35 153.3 214 43.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.8e-35 153.3 146 58.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 8.0e-35 151.8 115 66.1
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-34 151.0 161 55.3
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 3.0e-34 149.8 254 41.3
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 4.0e-34 149.4 231 42.4
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 5.2e-34 149.1 292 43.8
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.2e-33 147.9 209 45.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 6.4e-32 142.1 130 58.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.4e-31 140.2 159 52.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 9.2e-31 138.3 231 41.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.0e-29 134.8 243 50.6
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 1.2e-27 127.9 186 44.6
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.1e-26 124.8 80 82.5
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.0e-25 120.6 111 61.3
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 6.4e-24 115.5 260 45.0
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.4e-23 114.4 136 50.7
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 1.6e-22 110.9 132 52.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 7.3e-20 102.1 106 52.8
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 6.8e-18 95.5 136 43.4
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 3.2e-15 86.7 228 30.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 4.1e-15 86.3 66 63.6
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 9.2e-15 85.1 210 30.5
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 9.2e-15 85.1 172 42.4
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 4.6e-14 82.8 185 31.4
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.6e-11 73.2 88 48.9
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.7e-08 64.3 249 27.3
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.9e-08 63.5 64 53.1
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 1.9e-07 60.8 202 29.2
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 5.4e-07 59.3 118 33.1
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 6.0e-06 55.8 57 54.4


User provided reference genes

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