Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 9.3e-212 740.0 376 100.0
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 1.8e-207 725.7 376 98.1
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 2.9e-205 718.4 376 96.8
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 2.5e-204 715.3 376 96.5
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 6.0e-203 710.7 376 95.7
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 1.0e-202 709.9 376 95.2
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 4.8e-200 701.0 376 94.9
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 6.2e-200 700.7 376 94.1
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 3.1e-199 698.4 376 94.7
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 3.1e-199 698.4 376 94.7
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 3.1e-199 698.4 376 94.7
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 3.1e-199 698.4 376 94.1
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 1.2e-198 696.4 376 93.6
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 1.2e-198 696.4 376 94.4
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 3.4e-198 694.9 376 93.4
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 4.5e-198 694.5 376 93.6
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 1.3e-197 693.0 376 93.1
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 2.9e-197 691.8 376 92.8
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 4.9e-197 691.0 376 92.8
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 5.7e-193 677.6 376 91.2
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.8e-192 675.2 376 91.5
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 3.9e-178 628.2 379 85.2
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 1.4e-175 619.8 377 83.6
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 4.1e-175 618.2 376 83.2
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 2.0e-174 615.9 376 83.0
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 3.5e-174 615.1 377 83.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 3.8e-173 611.7 378 81.5
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 2.5e-172 609.0 379 81.8
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 2.5e-172 609.0 378 82.8
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 9.4e-172 607.1 376 81.6
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 9.4e-172 607.1 372 83.1
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.2e-171 606.7 364 85.7
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.2e-171 606.7 375 83.2
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 2.7e-171 605.5 380 82.1
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 3.6e-171 605.1 376 82.7
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 1.0e-170 603.6 377 82.0
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 1.0e-170 603.6 376 81.9
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 3.0e-170 602.1 376 81.1
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.9e-170 601.7 376 81.1
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 3.9e-170 601.7 370 82.4
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 5.2e-170 601.3 378 82.3
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 6.7e-170 600.9 367 84.5
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 8.8e-170 600.5 377 81.7
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 1.5e-169 599.7 378 82.5
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 1.5e-169 599.7 371 83.3
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.5e-169 599.7 348 86.5
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 2.0e-169 599.4 379 80.7
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 2.6e-169 599.0 380 81.8
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 3.3e-169 598.6 356 84.6
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 3.3e-169 598.6 356 84.6
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.3e-168 596.7 377 81.4
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 1.7e-168 596.3 383 81.2
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.2e-168 595.9 376 80.6
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.8e-168 595.5 376 80.9
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.8e-168 595.5 348 85.3
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 3.7e-168 595.1 348 85.3
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 6.3e-168 594.3 364 84.3
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.1e-167 593.6 348 85.1
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.1e-167 593.6 348 85.1
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 1.1e-167 593.6 356 84.3
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.1e-167 593.6 382 81.4
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.4e-167 593.2 379 82.1
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.4e-167 593.2 348 85.1
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.1e-167 592.0 348 84.8
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 4.1e-167 591.7 376 80.1
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 5.3e-167 591.3 383 79.4
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 7.0e-167 590.9 345 86.1
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 9.1e-167 590.5 367 80.9
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.2e-166 590.1 364 81.9
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.2e-166 590.1 345 86.7
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 2.0e-166 589.3 366 81.4
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 2.6e-166 589.0 366 81.4
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 7.7e-166 587.4 366 81.1
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 7.7e-166 587.4 378 79.9
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.0e-165 587.0 363 83.5
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 1.3e-165 586.6 366 81.7
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 2.2e-165 585.9 354 84.2
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 5.0e-165 584.7 376 79.0
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 8.5e-165 583.9 376 78.7
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 1.1e-164 583.6 376 80.1
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 1.1e-164 583.6 361 82.8
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 1.1e-164 583.6 368 82.9
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.9e-164 582.8 345 86.4
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 1.9e-164 582.8 369 81.3
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 3.2e-164 582.0 383 78.1
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 3.2e-164 582.0 362 80.9
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 4.2e-164 581.6 345 84.3
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 5.5e-164 581.3 371 80.1
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 9.4e-164 580.5 372 81.5
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 1.2e-163 580.1 365 80.3
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.2e-163 580.1 380 78.4
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 2.1e-163 579.3 366 80.6
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 2.1e-163 579.3 363 80.4
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.7e-163 578.9 345 85.5
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 2.7e-163 578.9 355 82.8
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 4.7e-163 578.2 347 83.3
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 4.7e-163 578.2 378 79.4
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 4.7e-163 578.2 347 82.7
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 8.0e-163 577.4 375 80.5
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 5.2e-162 574.7 381 78.7
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 6.8e-162 574.3 353 82.4
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 2.8e-160 568.9 353 81.6
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.1e-159 567.0 353 81.0
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 1.4e-159 566.6 347 81.3
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 1.8e-159 566.2 382 77.2
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 2.4e-159 565.8 372 78.0
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 5.4e-159 564.7 378 77.2
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 5.4e-159 564.7 347 81.6
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 7.0e-159 564.3 347 82.1
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 7.0e-159 564.3 370 78.9
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 5.0e-157 558.1 363 76.9
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 2.5e-156 555.8 322 86.3
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.2e-155 553.5 397 72.3
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 3.0e-154 548.9 350 78.3
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 4.0e-154 548.5 356 77.2
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 4.4e-153 545.0 356 76.7
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 5.7e-153 544.7 345 79.4
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 6.3e-152 541.2 374 76.2
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 4.5e-150 535.0 365 74.5
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 3.8e-149 531.9 384 74.7
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 9.8e-145 517.3 348 77.3
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 8.3e-144 514.2 294 87.4
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 1.8e-143 513.1 323 78.9
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 5.4e-143 511.5 337 78.0
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 8.0e-139 497.7 337 76.0
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 2.6e-137 492.7 355 69.9
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 3.5e-134 482.3 360 70.3
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.0e-133 479.2 294 81.3
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 4.9e-120 435.3 306 71.6
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 8.4e-120 434.5 324 72.5
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 2.1e-107 393.3 225 88.0
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 1.8e-85 320.5 188 85.1
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.8e-85 320.5 186 87.6
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.2e-63 246.5 165 75.8
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.7e-62 243.4 165 74.5
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 4.8e-59 232.6 177 70.1
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 4.8e-59 232.6 118 96.6
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 1.8e-58 230.7 118 95.8
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 9.4e-55 218.4 240 53.8
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.1e-50 201.8 138 73.9
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.5e-48 195.7 170 63.5
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.5e-48 195.7 170 63.5
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.7e-46 190.3 125 75.2
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.3e-45 187.2 121 76.0
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.6e-38 164.5 97 83.5
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 3.6e-38 163.3 102 79.4
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.2e-36 158.3 119 75.6
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.6e-36 157.1 79 98.7
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 5.0e-32 142.9 123 61.0
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.3e-31 140.2 158 52.5
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 4.3e-31 139.8 71 93.0
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 8.0e-30 135.6 67 95.5
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.0e-29 133.3 116 62.1
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 4.0e-29 133.3 77 85.7
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 5.2e-29 132.9 88 76.1
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.4e-28 129.8 115 60.9
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 4.4e-28 129.8 67 91.0
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 5.7e-28 129.4 72 87.5
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.8e-28 128.6 102 64.7
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.7e-27 127.9 77 79.2
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 4.6e-25 119.8 84 70.2
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 3.7e-19 100.1 81 69.1
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 6.0e-17 92.8 59 78.0
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 4.3e-15 86.7 58 72.4
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.8e-13 81.3 52 71.2
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.3e-11 75.1 40 95.0
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 2.9e-11 73.9 377 24.4
C05p12750 Brassica napus HOM05D004220 ORTHO05D040138 4.7e-06 56.6 29 96.6


User provided reference genes

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