Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 8.1e-212 740.3 430 100.0
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 2.2e-169 599.4 432 77.5
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 3.6e-159 565.5 435 77.7
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 1.1e-144 517.3 428 69.6
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.0e-142 510.8 436 63.3
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 2.0e-133 479.9 437 60.4
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.3e-132 477.2 433 65.6
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 1.7e-129 466.8 438 59.8
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 5.6e-128 461.8 441 59.0
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 3.1e-126 456.1 434 59.2
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 3.4e-125 452.6 431 60.1
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 3.1e-110 402.9 408 56.6
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 4.5e-101 372.5 427 52.2
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 4.5e-101 372.5 427 52.2
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.3e-95 354.4 444 50.0
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 3.4e-93 346.3 443 48.1
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.7e-92 344.0 382 53.7
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 2.1e-82 310.5 438 43.4
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 2.8e-79 300.1 427 45.7
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 5.5e-67 259.2 465 37.6
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 2.4e-46 190.7 266 48.9
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 3.9e-28 130.2 159 46.5
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 3.4e-24 117.1 145 43.4
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 9.8e-24 115.5 150 42.7
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 2.9e-23 114.0 418 25.6
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 3.7e-23 113.6 422 26.5
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.9e-22 111.3 147 44.9
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 4.1e-22 110.2 145 42.8
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 5.4e-22 109.8 165 40.6
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 5.4e-22 109.8 142 42.3
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.7e-21 107.5 165 40.6
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 7.8e-21 105.9 160 38.8
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 7.8e-21 105.9 160 39.4
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.3e-20 105.1 147 41.5
BcaC07g40429 Brassica carinata HOM05D010589 ORTHO05D001927 3.9e-20 103.6 72 69.4
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 3.9e-20 103.6 406 26.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.9e-20 103.6 181 38.1
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 5.0e-20 103.2 433 26.3
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 8.6e-20 102.4 147 39.5
BolC5t30016H Brassica oleracea HOM05D010589 ORTHO05D001927 1.5e-19 101.7 60 76.7
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.5e-19 101.7 403 26.3
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.5e-19 101.7 452 24.3
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 1.9e-19 101.3 137 40.9
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 3.3e-19 100.5 158 39.9
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 3.3e-19 100.5 152 40.8
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 5.6e-19 99.8 140 42.9
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.2e-18 98.6 155 38.1
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.6e-18 98.2 133 42.1
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.6e-18 98.2 133 42.1
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.1e-18 97.8 155 38.1
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 2.1e-18 97.8 163 38.0
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 2.8e-18 97.4 159 39.0
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.6e-18 97.1 133 41.4
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 4.7e-18 96.7 412 24.5
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 1.1e-17 95.5 180 36.7
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 1.8e-17 94.7 143 39.9
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 2.3e-17 94.4 144 37.5
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.3e-17 94.4 142 39.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.1e-17 94.0 170 34.1
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 4.0e-17 93.6 135 40.7
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 4.0e-17 93.6 403 24.3
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 5.2e-17 93.2 172 34.9
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 6.8e-17 92.8 135 40.7
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 6.8e-17 92.8 142 37.3
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 6.8e-17 92.8 142 38.7
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 8.9e-17 92.4 168 36.3
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.9e-17 92.4 168 36.3
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.9e-17 92.4 168 36.3
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.0e-16 91.3 130 39.2
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 3.4e-16 90.5 165 33.3
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 7.5e-16 89.4 165 35.2
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 9.8e-16 89.0 130 39.2
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 1.3e-15 88.6 130 40.0
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 1.3e-15 88.6 143 38.5
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 1.7e-15 88.2 187 35.8
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.7e-15 88.2 127 40.9
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 2.2e-15 87.8 190 30.0
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 2.2e-15 87.8 451 22.6
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 2.2e-15 87.8 138 37.7
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.7e-15 87.0 422 25.1
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.7e-15 87.0 135 39.3
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 3.7e-15 87.0 133 39.8
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 6.4e-15 86.3 136 35.3
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.4e-14 85.1 402 25.6
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 2.4e-14 84.3 140 38.6
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.2e-13 82.0 403 22.6
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.7e-13 80.9 133 40.6
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.7e-13 80.9 158 34.2
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 2.7e-13 80.9 165 33.3
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 3.5e-13 80.5 398 24.6
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 3.5e-13 80.5 145 35.9
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 4.6e-13 80.1 102 41.2
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.6e-13 80.1 127 39.4
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 6.0e-13 79.7 145 35.9
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.3e-12 78.6 185 33.0
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.7e-12 78.2 142 34.5
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.7e-12 78.2 485 23.7
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.7e-12 78.2 485 23.7
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.3e-12 77.8 142 34.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 5.1e-12 76.6 157 29.9
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 8.6e-12 75.9 146 34.2
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 8.6e-12 75.9 146 34.2
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 1.5e-11 75.1 171 29.8
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.5e-11 74.3 133 36.8
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 4.3e-11 73.6 130 38.5
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 7.3e-11 72.8 178 27.0
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 7.3e-11 72.8 140 35.0
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 2.1e-10 71.2 123 34.1
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 3.6e-10 70.5 141 36.2
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 3.6e-10 70.5 137 35.8
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 6.2e-10 69.7 167 29.9
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 8.1e-10 69.3 155 32.3
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 8.1e-10 69.3 409 23.2
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.4e-09 68.6 140 35.7
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 4.0e-09 67.0 469 23.5
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 6.8e-09 66.2 86 43.0
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 6.8e-09 66.2 129 34.1
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 8.9e-09 65.9 145 31.7
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 8.9e-09 65.9 423 25.1
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 8.9e-09 65.9 183 30.1
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.2e-08 65.5 153 35.3
BcaB04g20097 Brassica carinata HOM05D010589 ORTHO05D001927 5.8e-08 63.2 64 59.4
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 5.8e-08 63.2 129 34.9
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 7.6e-08 62.8 142 30.3
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.3e-07 62.0 138 32.6
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.7e-07 61.6 431 21.1
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 2.2e-07 61.2 393 24.4
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 2.2e-07 61.2 126 32.5
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 6.4e-07 59.7 57 40.4
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 1.4e-06 58.5 113 38.1
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 5.4e-06 56.6 70 40.0


User provided reference genes

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