Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.7e-134 482.6 234 100.0
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 7.7e-132 473.8 234 97.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.9e-131 471.9 234 97.9
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.0e-128 461.8 232 95.7
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.8e-126 455.3 232 94.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 4.9e-126 454.5 232 94.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.4e-125 452.2 234 92.7
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.9e-124 447.6 235 93.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.7e-123 446.0 239 92.1
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.3e-123 445.7 235 93.2
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-123 445.3 229 94.8
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-122 443.4 235 92.8
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-122 442.2 235 92.3
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 5.6e-122 441.0 235 92.3
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 7.3e-122 440.7 238 89.9
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.6e-121 439.5 232 91.4
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.4e-120 436.4 234 90.6
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 9.8e-103 377.1 234 76.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 8.6e-99 364.0 212 84.4
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.3e-96 355.9 230 73.5
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.0e-96 355.1 232 71.1
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.4e-95 352.1 232 74.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 7.6e-95 350.9 226 72.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 7.6e-95 350.9 226 72.6
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.9e-95 350.5 226 71.7
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.9e-95 350.5 226 71.7
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 9.9e-95 350.5 226 73.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 9.9e-95 350.5 229 72.5
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.3e-94 350.1 230 73.0
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.2e-94 349.4 222 73.0
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.9e-94 349.0 226 71.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 8.4e-94 347.4 226 71.7
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-93 346.7 226 72.1
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.4e-93 346.7 232 69.0
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.4e-93 345.9 226 70.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.2e-93 345.5 231 71.0
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.2e-93 345.5 221 72.9
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 9.2e-93 344.0 226 69.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.6e-92 343.2 226 72.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.5e-92 342.0 233 71.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 4.6e-92 341.7 226 71.7
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 6.0e-92 341.3 221 72.9
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 6.0e-92 341.3 221 72.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.0e-91 340.5 222 71.6
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.3e-91 340.1 230 70.0
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.7e-91 339.7 238 71.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.3e-91 339.3 232 67.7
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.3e-91 339.3 222 72.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.0e-91 339.0 228 71.5
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 5.1e-91 338.2 230 70.0
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.1e-91 338.2 221 71.9
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.6e-91 337.8 228 71.1
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.6e-91 337.8 231 70.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.1e-90 337.0 222 71.2
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.5e-90 335.9 230 69.1
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.3e-90 335.5 234 69.2
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 4.3e-90 335.1 226 69.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 9.6e-90 334.0 230 70.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-89 333.2 219 71.7
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.4e-88 330.1 229 69.4
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.4e-88 329.3 219 70.8
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 68.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 68.8
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.4e-88 329.3 233 66.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.0e-88 328.6 228 69.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.0e-88 328.6 222 68.5
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 4.0e-88 328.6 234 68.8
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 4.0e-88 328.6 228 70.2
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 5.2e-88 328.2 253 64.0
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 5.2e-88 328.2 226 69.9
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 6.9e-88 327.8 236 69.5
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.9e-88 327.4 219 70.8
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 8.9e-88 327.4 224 68.3
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.0e-87 326.2 222 67.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.6e-87 325.9 235 65.5
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.4e-87 325.5 231 67.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.3e-86 323.6 232 65.5
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.9e-86 322.4 234 67.9
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 4.9e-86 321.6 217 70.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.4e-86 321.2 212 70.8
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.9e-85 319.7 239 64.4
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.3e-85 317.4 220 69.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.6e-84 316.6 226 67.3
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-84 316.2 235 65.1
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.7e-84 315.8 220 69.1
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.5e-84 315.5 215 69.8
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.6e-84 315.1 221 66.5
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.6e-84 315.1 219 68.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.0e-84 314.7 234 64.5
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 6.0e-84 314.7 224 67.4
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.8e-84 314.3 220 69.5
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.0e-83 313.9 220 67.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.3e-83 313.5 235 65.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.7e-83 313.2 212 68.4
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.7e-83 310.8 219 68.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.1e-82 310.5 226 65.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.5e-82 309.3 207 71.0
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 4.3e-82 308.5 230 67.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 4.3e-82 308.5 230 67.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.8e-81 305.8 236 62.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.6e-81 305.4 212 67.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 4.8e-81 305.1 229 63.8
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.8e-81 305.1 233 62.7
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.4e-80 303.5 226 64.6
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.1e-80 302.4 230 64.8
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 4.0e-80 302.0 230 63.5
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 4.0e-80 302.0 231 65.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.3e-80 301.6 224 65.2
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.3e-80 301.6 224 65.2
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.3e-80 301.6 233 63.1
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 6.9e-80 301.2 229 63.8
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.0e-79 299.7 228 65.4
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 9.9e-79 297.4 211 66.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.2e-78 296.2 234 63.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.1e-77 293.9 233 60.9
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.4e-77 293.5 232 62.9
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-77 293.5 221 67.4
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.7e-76 289.3 220 64.1
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.0e-75 287.3 243 58.4
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 3.9e-75 285.4 239 61.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.5e-74 283.5 255 56.1
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.8e-73 279.3 180 78.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 5.3e-72 275.0 228 59.2
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.4e-71 272.3 228 61.8
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.9e-70 268.5 183 70.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-69 267.3 181 69.1
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.6e-68 261.9 171 72.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.3e-67 260.4 231 58.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.5e-66 256.9 233 57.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.9e-66 256.5 232 56.9
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.1e-64 249.2 210 53.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-61 239.2 163 69.3
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.0e-59 234.2 159 68.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.5e-58 230.3 160 65.6
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.4e-56 223.0 179 62.0
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.2e-54 216.5 228 48.7
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.2e-53 212.6 177 61.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 6.1e-52 208.4 213 49.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.8e-51 206.8 188 59.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.6e-49 200.3 152 69.1
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.7e-46 190.3 202 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.5e-46 188.0 202 47.0
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.6e-44 182.6 120 66.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 7.9e-44 181.4 143 65.7
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-41 172.6 133 58.6
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 3.9e-35 152.5 219 42.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 3.7e-33 146.0 209 38.8
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 7.7e-31 138.3 99 67.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.2e-30 136.7 99 59.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 2.2e-30 136.7 90 76.7
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.6e-28 130.6 75 88.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.3e-27 126.7 212 36.8
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 4.4e-26 122.5 158 43.0
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 3.8e-22 109.4 92 57.6
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.2e-20 104.4 102 55.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.0e-19 101.3 202 29.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.2e-19 99.0 67 68.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-15 87.8 67 68.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.6e-15 87.4 71 67.6
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 7.7e-15 85.1 115 38.3
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-14 84.3 61 68.9
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.0e-14 82.4 61 67.2
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.1e-12 77.0 55 67.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-09 67.8 54 61.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.8e-09 66.6 152 29.6
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.2e-08 61.6 41 80.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.3e-06 57.0 49 63.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.3e-06 57.0 54 61.1
BraA05t19164Z Brassica rapa HOM05D004213 ORTHO05D107977 6.6e-06 55.5 27 88.9


User provided reference genes

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