Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 4.8e-51 204.1 98 100.0
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 4.6e-38 161.0 93 83.9
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.1e-37 157.5 74 100.0
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 8.8e-37 156.8 86 88.4
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.9e-34 147.1 74 93.2
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 6.9e-34 147.1 74 93.2
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-33 146.0 75 94.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.4e-33 144.8 75 93.3
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 4.5e-33 144.4 75 93.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 4.5e-33 144.4 75 93.3
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 7.7e-33 143.7 74 90.5
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.7e-33 143.7 74 91.9
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-32 143.3 74 90.5
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.5e-31 138.7 75 90.7
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 3.6e-30 134.8 74 87.8
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 4.7e-30 134.4 74 87.8
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 86.5
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 86.5
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 86.5
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 86.5
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 86.5
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.4e-29 132.9 74 87.8
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.8e-29 132.5 74 85.1
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.3e-29 132.1 74 85.1
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 5.1e-29 131.0 76 82.9
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 8.8e-29 130.2 70 85.7
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.5e-28 129.4 74 83.8
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.3e-28 128.3 70 81.4
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.2e-27 125.6 74 81.1
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 6.3e-27 124.0 74 81.1
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.0e-24 116.7 71 73.2
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.2e-24 115.5 73 75.3
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 3.8e-24 114.8 74 71.6
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.5e-23 112.8 73 74.0
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 4.2e-23 111.3 69 73.9
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 7.2e-23 110.5 63 77.8
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 7.2e-23 110.5 69 72.5
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 9.4e-23 110.2 74 68.9
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.2e-22 109.8 72 73.6
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 2.7e-22 108.6 68 75.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 4.7e-22 107.8 64 82.8
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 4.7e-22 107.8 68 73.5
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 8.0e-22 107.1 64 76.6
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.8e-21 105.9 72 68.1
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.3e-21 105.5 67 74.6
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.0e-21 105.1 63 73.0
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 4.0e-21 104.8 74 64.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 4.0e-21 104.8 74 64.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 4.0e-21 104.8 74 64.9
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 5.2e-21 104.4 61 77.0
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 6.7e-21 104.0 67 74.6
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 6.7e-21 104.0 72 65.3
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 8.8e-21 103.6 70 67.1
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 8.8e-21 103.6 60 75.0
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-20 103.2 73 68.5
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.1e-20 103.2 60 75.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.5e-20 102.8 61 75.4
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.5e-20 102.8 61 75.4
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.5e-20 102.8 65 72.3
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.5e-20 102.8 73 68.5
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.5e-20 102.8 73 68.5
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.5e-20 102.8 89 59.6
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.0e-20 102.4 73 68.5
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.0e-20 102.4 71 66.2
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-20 102.1 57 78.9
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.6e-20 102.1 73 65.8
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.6e-20 102.1 65 70.8
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 3.3e-20 101.7 57 78.9
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 4.4e-20 101.3 68 70.6
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 4.4e-20 101.3 65 70.8
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.4e-20 101.3 72 65.3
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.4e-20 100.5 53 83.0
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.7e-19 99.4 62 71.0
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.7e-19 99.4 65 69.2
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.8e-19 98.6 53 81.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 2.8e-19 98.6 72 63.9
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 4.8e-19 97.8 64 67.2
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 8.2e-19 97.1 68 63.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 8.2e-19 97.1 68 63.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 8.2e-19 97.1 57 73.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 8.2e-19 97.1 57 73.7
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.1e-18 96.7 73 63.0
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.8e-18 95.9 66 65.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.4e-18 95.5 54 74.1
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.4e-18 95.5 70 61.4
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.1e-18 95.1 63 63.5
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 4.1e-18 94.7 62 69.4
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.1e-18 94.7 57 75.4
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 4.1e-18 94.7 70 64.3
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 7.0e-18 94.0 74 62.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 7.0e-18 94.0 57 71.9
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.1e-18 93.6 55 74.5
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 9.1e-18 93.6 53 75.5
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 9.1e-18 93.6 60 68.3
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 9.1e-18 93.6 62 64.5
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.2e-17 93.2 50 82.0
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.6e-17 92.8 54 74.1
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 1.6e-17 92.8 58 70.7
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.0e-17 92.4 57 77.2
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.6e-17 92.0 66 68.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-17 92.0 73 63.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 2.6e-17 92.0 64 67.2
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.7e-17 90.5 60 63.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.7e-17 90.5 60 63.3
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.7e-17 90.5 62 66.1
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.2e-16 89.0 57 73.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 5.0e-16 87.8 57 70.2
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.5e-15 86.3 62 66.1
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 7.2e-15 84.0 70 58.6
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 9.4e-15 83.6 58 63.8
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.2e-14 83.2 46 78.3
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-14 83.2 54 68.5
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.1e-14 82.4 62 61.3
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 8.0e-14 80.5 57 68.4
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.8e-13 79.3 37 94.6
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.8e-13 79.3 56 64.3
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 7.5e-12 73.9 44 84.1
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 6.3e-11 70.9 58 51.7
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.1e-10 70.1 50 60.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.0e-09 65.9 59 49.2
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.0e-09 65.9 51 51.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 5.9e-09 64.3 50 50.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.8e-08 61.6 30 83.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.1e-07 60.1 59 50.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.1e-07 60.1 59 50.8
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.5e-07 58.9 47 51.1
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 7.2e-07 57.4 58 46.6
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.2e-06 56.6 56 48.2
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 8.0e-06 53.9 57 47.4


User provided reference genes

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