Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.6e-272 942.2 475 100.0
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 5.1e-223 777.7 479 83.3
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.9e-217 759.2 467 84.2
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 2.2e-202 709.1 467 76.0
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 2.2e-202 709.1 475 75.6
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 3.2e-201 705.3 467 76.0
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.5e-200 701.8 463 76.0
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.3e-199 699.9 474 74.7
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 3.0e-199 698.7 471 73.9
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 6.7e-199 697.6 457 75.9
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 3.7e-197 691.8 461 75.5
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 8.2e-197 690.6 476 74.4
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 3.8e-194 681.8 484 71.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 1.1e-193 680.2 467 74.5
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 1.1e-193 680.2 467 74.5
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 3.3e-190 668.7 479 72.9
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.6e-168 596.7 470 65.3
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.6e-168 596.7 369 81.8
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 8.0e-168 594.3 472 64.2
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 9.7e-166 587.4 464 63.6
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.7e-165 586.6 455 65.1
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 4.8e-165 585.1 460 63.3
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 9.1e-164 580.9 451 64.7
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.7e-163 579.3 467 62.7
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 2.7e-163 579.3 467 63.6
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 4.5e-163 578.6 466 63.3
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 5.9e-163 578.2 466 63.5
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 5.9e-163 578.2 467 62.1
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 7.7e-163 577.8 477 62.1
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 5.0e-162 575.1 465 62.6
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 5.0e-162 575.1 472 61.4
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 5.0e-162 575.1 490 60.4
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 6.5e-162 574.7 464 62.1
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 8.5e-162 574.3 445 64.9
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 2.5e-161 572.8 457 62.8
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 3.2e-161 572.4 453 62.7
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 3.2e-161 572.4 459 64.3
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 3.2e-161 572.4 457 62.8
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 4.2e-161 572.0 462 62.6
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 5.5e-161 571.6 455 63.5
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 9.4e-161 570.9 457 63.2
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 1.2e-160 570.5 459 63.0
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 2.1e-160 569.7 449 64.4
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.7e-160 568.5 453 64.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 8.0e-160 567.8 441 64.9
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 8.0e-160 567.8 452 63.5
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.4e-159 567.0 453 63.8
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 1.8e-159 566.6 449 64.8
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.3e-159 566.2 460 62.4
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.0e-159 565.8 466 61.8
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 3.0e-159 565.8 461 61.4
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 5.2e-159 565.1 463 61.6
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 6.8e-159 564.7 449 64.6
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 3.4e-158 562.4 451 64.1
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 4.4e-158 562.0 448 63.6
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 2.2e-157 559.7 464 60.8
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 2.8e-157 559.3 451 63.2
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 4.1e-156 555.4 443 64.3
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.2e-155 553.9 460 61.7
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 2.0e-155 553.1 470 61.9
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 4.5e-155 552.0 465 60.2
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 7.7e-155 551.2 455 62.2
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 7.7e-155 551.2 465 59.8
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 7.7e-155 551.2 494 57.9
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 3.8e-154 548.9 469 60.1
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 5.0e-154 548.5 467 59.7
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.9e-153 546.6 466 60.1
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 3.2e-153 545.8 433 64.4
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 4.0e-151 538.9 462 60.8
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 2.4e-148 529.6 469 58.6
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.0e-146 524.2 419 64.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.5e-145 520.4 467 57.4
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 6.1e-144 515.0 411 64.2
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 2.3e-143 513.1 451 58.3
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.0e-142 510.0 551 51.0
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.4e-142 509.2 474 56.8
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.1e-140 504.2 448 56.0
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 9.2e-140 501.1 465 56.3
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 5.6e-137 491.9 434 59.7
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 6.2e-136 488.4 467 55.7
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 9.8e-134 481.1 448 55.6
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 2.9e-133 479.6 467 53.7
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 2.4e-132 476.5 536 50.7
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.5e-129 467.2 313 75.4
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.5e-129 466.5 458 55.0
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.7e-125 453.8 413 59.1
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 2.2e-125 453.4 474 54.4
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.4e-124 449.9 371 61.2
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 7.1e-124 448.4 475 53.3
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.6e-122 441.4 378 59.8
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.6e-120 437.2 471 52.9
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 9.2e-116 421.4 457 53.0
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 2.7e-115 419.9 495 49.7
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 3.0e-114 416.4 469 50.1
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 7.3e-113 411.8 341 61.0
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 4.7e-112 409.1 505 47.1
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 9.0e-111 404.8 356 60.1
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 4.4e-110 402.5 469 48.6
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 1.5e-105 387.5 319 60.5
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 6.4e-101 372.1 313 61.7
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 7.1e-100 368.6 326 57.4
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 8.7e-98 361.7 449 46.3
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.3e-97 359.8 472 44.7
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 4.0e-95 352.8 466 43.3
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 6.7e-90 335.5 438 45.9
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 5.6e-89 332.4 463 43.0
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.1e-88 330.5 269 61.7
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 6.2e-88 328.9 303 54.8
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 2.5e-84 317.0 267 59.9
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.6e-80 304.3 458 43.0
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 3.7e-80 303.1 293 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.5e-70 271.2 366 43.7
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.8e-69 266.5 285 53.3
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.4e-55 220.7 757 26.2
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.0e-54 217.6 303 43.2
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 1.1e-52 211.8 163 62.6
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 7.2e-52 209.1 452 31.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.6e-41 174.1 174 58.6
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.2e-40 171.0 153 58.2
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 1.4e-31 141.7 95 70.5
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 5.4e-31 139.8 445 26.3
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 7.0e-31 139.4 174 48.9
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.8e-26 124.8 112 58.9
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 2.9e-24 117.5 93 62.4
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.4e-23 115.2 67 77.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-23 114.8 76 68.4
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 4.7e-19 100.1 523 23.7
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 5.8e-17 93.2 237 32.9
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 4.7e-11 73.6 63 60.3
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.4e-07 62.0 102 43.1
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.4e-07 61.2 37 70.3


User provided reference genes

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