Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.1e-61 238.8 116 100.0
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.1e-51 206.5 114 87.7
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.6e-45 184.5 116 77.6
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.7e-40 167.2 115 71.3
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.7e-37 157.9 116 68.1
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 4.4e-35 151.4 116 66.4
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.5e-32 141.7 123 56.9
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.5e-31 137.5 89 70.8
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 8.5e-31 137.1 125 54.4
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 4.2e-30 134.8 125 52.0
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 7.2e-30 134.0 125 52.0
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 9.4e-30 133.7 125 52.8
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.1e-29 132.5 115 55.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 4.7e-29 131.3 124 53.2
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 4.7e-29 131.3 124 53.2
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-28 129.8 123 51.2
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 8.8e-28 127.1 124 51.6
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.8e-28 127.1 117 53.0
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.0e-27 125.9 122 53.3
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.0e-27 125.9 123 50.4
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 2.6e-27 125.6 148 47.3
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 9.7e-27 123.6 148 46.6
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 8.2e-26 120.6 125 48.8
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 8.2e-26 120.6 127 52.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 5.3e-25 117.9 122 48.4
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.3e-25 117.9 122 50.8
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 2.6e-24 115.5 124 49.2
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 3.5e-24 115.2 124 48.4
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 7.7e-24 114.0 124 48.4
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.7e-23 112.8 124 47.6
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 2.9e-23 112.1 126 50.8
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 3.8e-23 111.7 124 46.8
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 6.5e-23 110.9 117 49.6
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 6.5e-23 110.9 119 49.6
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-22 110.2 117 47.0
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-22 110.2 128 45.3
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 3.2e-22 108.6 117 47.0
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 3.2e-22 108.6 115 52.2
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 3.2e-22 108.6 117 47.0
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-21 106.3 117 47.0
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 1.6e-21 106.3 126 48.4
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 2.7e-21 105.5 117 46.2
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 2.7e-21 105.5 117 46.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 3.6e-21 105.1 118 49.2
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.7e-21 104.8 118 47.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 8.0e-21 104.0 118 48.3
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-21 104.0 118 48.3
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-21 104.0 105 48.6
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-21 104.0 118 48.3
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.8e-20 102.8 101 54.5
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-19 99.8 117 45.3
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-19 99.8 105 46.7
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 2.0e-19 99.4 113 43.4
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-19 99.0 109 45.9
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 2.6e-19 99.0 109 45.9
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 2.6e-19 99.0 117 47.0
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 3.4e-19 98.6 111 46.8
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 4.4e-19 98.2 124 44.4
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 4.4e-19 98.2 120 45.8
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.7e-18 96.3 117 43.6
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-18 95.9 124 42.7
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.2e-18 95.9 122 48.4
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-17 92.8 115 44.3
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.4e-17 92.4 118 47.5
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-17 92.0 116 44.8
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 3.1e-17 92.0 116 44.8
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 4.1e-17 91.7 119 47.1
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 4.1e-17 91.7 105 44.8
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 7.0e-17 90.9 120 45.0
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-16 89.7 116 44.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 1.6e-16 89.7 116 44.8
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 5.9e-16 87.8 94 45.7
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.7e-16 87.4 116 42.2
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-15 86.7 94 44.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-15 86.3 94 45.7
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 3.8e-15 85.1 114 37.7
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 5.0e-15 84.7 60 56.7
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 5.0e-15 84.7 114 41.2
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 5.0e-15 84.7 109 43.1
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 6.5e-15 84.3 94 44.7
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-14 83.6 105 44.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.5e-14 82.4 112 42.0
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.5e-14 82.4 112 42.0
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.5e-14 82.4 107 40.2
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.5e-14 82.4 108 40.7
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 2.5e-14 82.4 112 40.2
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 3.2e-14 82.0 112 42.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.2e-14 82.0 112 38.4
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 5.5e-14 81.3 111 38.7
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 9.4e-14 80.5 107 39.3
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-13 79.7 101 42.6
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.6e-13 79.7 112 38.4
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.1e-13 79.3 120 40.0
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.1e-13 79.3 99 41.4
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 2.1e-13 79.3 112 34.8
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.1e-13 79.3 113 36.3
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.1e-13 79.3 109 39.4
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.7e-13 79.0 117 39.3
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.1e-13 77.8 54 68.5
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.8e-12 76.3 114 38.6
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 3.0e-12 75.5 112 39.3
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.0e-12 75.5 111 37.8
BraA06t24090Z Brassica rapa HOM05D007482 ORTHO05D003038 4.0e-12 75.1 167 35.3
CARHR035980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.0e-12 75.1 54 66.7
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 5.2e-12 74.7 118 37.3
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 8.8e-12 73.9 112 39.3
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.8e-12 73.9 109 38.5
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 8.8e-12 73.9 113 35.4
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-11 73.2 109 39.4
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-11 72.8 49 65.3
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 2.0e-11 72.8 114 36.8
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 2.6e-11 72.4 109 38.5
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 2.6e-11 72.4 113 38.1
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.6e-11 72.4 119 37.0
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 2.6e-11 72.4 112 39.3
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 2.6e-11 72.4 108 38.9
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 3.4e-11 72.0 115 40.0
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 5.7e-11 71.2 109 38.5
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 5.7e-11 71.2 109 33.9
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 5.7e-11 71.2 112 35.7
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 7.5e-11 70.9 111 37.8
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 7.5e-11 70.9 111 34.2
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 7.5e-11 70.9 107 35.5
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 9.8e-11 70.5 110 38.2
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.3e-10 70.1 102 35.3
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.7e-10 69.7 112 38.4
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 1.7e-10 69.7 87 41.4
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 2.8e-10 68.9 92 41.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 2.8e-10 68.9 102 35.3
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.8e-10 68.9 117 36.8
AT1G12665 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.7e-10 68.6 49 65.3
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 3.7e-10 68.6 115 29.6
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 3.7e-10 68.6 117 35.9
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 3.7e-10 68.6 114 36.0
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 6.3e-10 67.8 113 34.5
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.1e-09 67.0 117 34.2
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.1e-09 67.0 119 33.6
A06p09010 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-09 66.6 71 50.7
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 1.4e-09 66.6 122 32.0
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 1.4e-09 66.6 122 32.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.4e-09 66.6 112 33.0
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.4e-09 66.6 117 34.2
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.8e-09 66.2 107 33.6
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.8e-09 66.2 112 36.6
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.4e-09 65.9 72 50.0
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.4e-09 65.9 93 37.6
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 4.1e-09 65.1 112 32.1
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 5.4e-09 64.7 124 32.3
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 5.4e-09 64.7 112 35.7
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 7.0e-09 64.3 110 35.5
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 7.0e-09 64.3 122 36.1
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 7.0e-09 64.3 113 37.2
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 9.1e-09 63.9 122 36.1
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 9.1e-09 63.9 89 36.0
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 9.1e-09 63.9 114 35.1
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.2e-08 63.5 116 36.2
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.2e-08 63.5 109 34.9
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.2e-08 63.5 52 50.0
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.6e-08 63.2 69 44.9
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 2.7e-08 62.4 122 32.0
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.7e-08 62.4 113 37.2
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 3.5e-08 62.0 91 36.3
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 3.5e-08 62.0 122 32.0
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 4.5e-08 61.6 95 35.8
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 4.5e-08 61.6 116 35.3
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.9e-08 61.2 69 42.0
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 5.9e-08 61.2 120 33.3
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 7.7e-08 60.8 109 31.2
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 1.0e-07 60.5 122 35.2
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.0e-07 60.5 108 35.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.0e-07 60.5 114 34.2
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.7e-07 59.7 117 33.3
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 2.3e-07 59.3 62 41.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-07 59.3 67 40.3
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-07 59.3 67 40.3
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-07 59.3 67 40.3
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 2.3e-07 59.3 66 42.4
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 3.8e-07 58.5 112 35.7
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.8e-07 58.5 117 32.5
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.0e-07 58.2 117 32.5
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.0e-07 58.2 110 34.5
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 5.0e-07 58.2 52 48.1
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 6.6e-07 57.8 103 31.1
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.5e-06 56.6 126 33.3
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-06 56.2 51 43.1
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.5e-06 55.8 89 34.8
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.5e-06 55.8 69 39.1
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 3.3e-06 55.5 52 55.8
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 9.5e-06 53.9 91 33.0


User provided reference genes

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