Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.6e-217 758.4 382 100.0
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.0e-173 613.6 353 87.5
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 5.1e-173 611.3 342 89.8
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 9.9e-169 597.0 342 85.7
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 3.8e-168 595.1 342 85.4
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.5e-164 582.4 350 82.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.0e-161 572.8 345 83.2
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.0e-161 572.8 345 83.2
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 3.2e-159 565.5 345 82.0
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.2e-159 565.5 345 82.0
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 6.6e-157 557.8 341 80.6
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 8.7e-157 557.4 340 81.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 8.7e-157 557.4 340 81.8
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.3e-156 555.1 340 81.8
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.7e-152 543.1 340 80.3
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 3.8e-152 542.0 342 76.3
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 4.6e-126 455.3 349 66.5
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 8.8e-125 451.1 345 66.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 7.4e-124 448.0 342 66.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.4e-122 443.7 347 63.7
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.1e-122 441.0 346 63.9
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.6e-121 439.5 350 62.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.5e-121 438.7 346 63.3
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.4e-119 433.7 347 63.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.2e-119 432.2 344 63.4
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.2e-118 430.6 357 61.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.1e-118 429.9 348 62.4
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.1e-118 429.9 390 57.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.7e-118 429.5 344 63.7
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.7e-118 429.5 341 63.0
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.9e-118 427.9 347 63.1
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.8e-117 426.8 347 63.1
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.3e-117 426.4 356 61.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.3e-117 426.4 400 56.5
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 5.1e-117 425.2 347 63.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 6.7e-117 424.9 343 62.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 3.3e-116 422.5 351 60.4
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 7.4e-116 421.4 388 57.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.7e-115 420.2 347 61.7
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 2.8e-115 419.5 343 62.1
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.7e-115 419.1 338 61.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.8e-115 418.7 378 59.3
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 6.3e-115 418.3 356 60.4
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 6.3e-115 418.3 341 61.9
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.4e-114 417.2 343 60.9
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.4e-114 417.2 345 61.4
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-114 417.2 380 57.1
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.8e-114 416.8 388 57.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 9.1e-114 414.5 348 60.9
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 9.1e-114 414.5 349 59.9
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.0e-113 413.3 354 59.9
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.5e-113 412.1 382 58.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.9e-113 411.8 347 61.1
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 6.5e-112 408.3 343 61.8
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.5e-112 407.9 350 60.6
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.5e-111 407.1 344 59.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.9e-111 406.8 349 58.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 5.5e-111 405.2 346 59.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 7.2e-111 404.8 354 59.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-110 401.4 358 60.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.0e-109 399.4 326 61.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 5.2e-109 398.7 348 58.3
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.0e-108 396.7 343 59.8
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 9.7e-108 394.4 349 57.3
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 9.7e-108 394.4 349 58.2
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-107 393.3 346 58.7
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-107 393.3 350 58.6
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 6.3e-107 391.7 356 56.5
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.6e-105 387.1 394 53.0
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-105 386.3 386 56.2
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.9e-104 382.9 394 53.6
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.9e-104 382.9 394 52.5
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 3.8e-104 382.5 353 57.5
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 5.0e-104 382.1 351 55.8
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.1e-103 380.9 316 60.4
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 5.5e-103 378.6 411 51.8
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 9.4e-103 377.9 380 54.7
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 8.0e-102 374.8 332 59.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 8.0e-102 374.8 351 57.3
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.0e-101 374.4 353 56.1
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.4e-101 374.0 346 60.4
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.8e-101 373.6 334 59.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.5e-100 370.5 384 53.1
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.6e-100 369.8 322 58.4
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 3.5e-97 359.4 369 53.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.8e-96 355.9 338 57.4
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 4.2e-95 352.4 347 54.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.2e-94 350.9 301 60.1
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 4.7e-94 349.0 289 60.9
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 5.2e-93 345.5 338 54.4
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-92 344.4 314 57.0
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.3e-91 340.9 289 58.8
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-91 340.9 299 58.5
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.7e-91 339.3 312 58.3
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.4e-90 336.7 290 59.3
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.1e-90 334.7 270 63.0
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 4.5e-89 332.4 334 55.1
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.3e-88 330.1 303 59.1
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-88 329.3 321 56.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 3.8e-88 329.3 349 51.9
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.3e-85 320.1 300 55.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 3.0e-85 319.7 287 57.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.2e-83 313.5 361 46.3
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.6e-80 301.6 340 50.6
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 8.6e-80 301.6 314 53.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.3e-79 299.7 301 53.2
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.2e-78 297.7 212 65.6
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.6e-78 296.2 246 59.3
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 7.8e-73 278.5 242 59.9
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.3e-72 277.7 326 50.0
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-72 276.2 361 45.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 3.3e-71 273.1 346 43.6
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.9e-67 259.2 171 70.8
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.0e-65 252.3 216 58.8
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 7.8e-65 251.9 359 41.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-64 251.5 170 70.6
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.3e-64 250.4 381 41.7
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.9e-63 247.3 282 48.2
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.2e-62 242.3 277 48.4
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.1e-58 231.5 185 58.9
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 6.0e-57 225.7 374 41.4
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.7e-56 224.2 348 42.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.3e-55 219.9 192 58.3
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-53 214.5 256 51.2
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 5.8e-52 209.1 200 55.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.0e-48 198.4 151 61.6
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 5.8e-44 182.6 129 69.0
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 3.8e-43 179.9 206 52.4
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-42 176.0 119 68.9
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.3e-40 171.4 99 83.8
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.4e-37 160.6 126 63.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 2.4e-34 150.6 359 31.8
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-31 141.7 149 53.7
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.3e-29 132.9 88 69.3
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 4.9e-27 126.3 136 50.0
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.6e-25 121.3 132 47.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 6.0e-25 119.4 95 62.1
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-23 113.6 120 60.0
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-21 106.7 78 61.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.0e-19 102.1 68 75.0
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.9e-19 100.5 131 42.7
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.1e-18 98.6 375 27.7
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 7.2e-18 95.9 417 24.5
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.3e-18 95.5 124 46.8
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.4e-13 80.9 185 33.5
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.0e-12 77.8 85 42.4
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.6e-12 77.4 83 51.8
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.0e-08 65.5 39 79.5


User provided reference genes

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