Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 6.8e-57 223.8 114 100.0
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.5e-51 206.1 116 90.5
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 3.3e-51 204.9 114 89.5
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 7.8e-45 183.7 115 80.9
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.7e-44 182.6 115 83.5
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-43 179.9 115 80.0
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-43 179.5 115 80.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 5.6e-43 177.6 115 80.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 5.6e-43 177.6 115 80.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.2e-42 176.4 115 80.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 8.1e-42 173.7 115 76.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 8.9e-41 170.2 115 74.8
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 8.9e-41 170.2 115 74.8
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 5.8e-40 167.5 115 74.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-39 166.4 115 73.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 3.7e-39 164.9 116 72.4
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 3.7e-39 164.9 116 72.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 6.4e-39 164.1 115 73.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-38 162.5 115 72.2
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 9.2e-38 160.2 115 72.2
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.7e-37 158.7 117 71.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.1e-34 149.1 114 69.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 3.4e-32 141.7 117 64.1
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 7.1e-30 134.0 118 61.9
BolC8t52343H Brassica oleracea HOM05D005226 ORTHO05D004666 1.5e-19 99.8 63 82.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 7.3e-19 97.4 115 49.6
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 5.3e-17 91.3 115 48.7
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 6.9e-17 90.9 115 47.8
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 9.0e-17 90.5 115 47.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 2.6e-16 89.0 113 49.6
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 5.8e-16 87.8 115 46.1
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.2e-15 85.9 101 46.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.9e-15 85.5 98 49.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.8e-15 85.1 101 47.5
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.1e-14 83.6 96 50.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.4e-14 83.2 117 44.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-14 82.8 117 45.3
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.9e-14 82.8 117 44.4
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.2e-14 82.0 113 44.2
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 117 43.6
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.1e-13 79.3 106 46.2
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.1e-13 79.3 98 45.9
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.7e-13 79.0 82 54.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.5e-13 78.6 109 43.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.5e-13 78.6 105 44.8
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.6e-13 78.2 109 45.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 6.0e-13 77.8 113 42.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.0e-13 77.8 120 40.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.0e-13 77.8 82 42.7
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 7.9e-13 77.4 114 42.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.3e-12 76.6 73 54.8
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.3e-12 76.6 98 44.9
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.3e-12 76.6 101 45.5
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.8e-12 76.3 101 46.5
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.8e-12 76.3 103 43.7
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.0e-12 75.5 103 42.7
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.0e-12 75.5 120 39.2
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.0e-12 75.5 103 42.7
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 121 38.8
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 120 39.2
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 8.7e-12 73.9 98 49.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.1e-11 73.6 101 46.5
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.1e-11 73.6 73 46.6
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.1e-11 73.6 113 43.4
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.5e-11 73.2 99 38.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.9e-11 72.8 95 48.4
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.9e-11 72.8 112 44.6
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-11 72.0 100 38.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.6e-11 71.2 71 47.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.4e-11 70.9 105 45.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 7.4e-11 70.9 115 36.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 9.6e-11 70.5 104 44.2
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 9.6e-11 70.5 96 41.7
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 9.6e-11 70.5 104 41.3
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 9.6e-11 70.5 98 42.9
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-10 70.1 110 41.8
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 103 38.8
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.6e-10 69.7 73 42.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.6e-10 69.7 67 56.7
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 104 39.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.6e-10 69.7 105 42.9
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.1e-10 69.3 76 50.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.1e-10 69.3 101 44.6
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.1e-10 69.3 96 40.6
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.8e-10 68.9 82 50.0
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-10 68.9 100 37.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-10 68.9 96 44.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.6e-10 68.6 86 43.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.8e-10 68.2 96 41.7
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.8e-10 68.2 100 36.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.8e-10 68.2 67 53.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.8e-10 68.2 103 45.6
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.8e-10 68.2 103 45.6
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 6.2e-10 67.8 119 37.0
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 6.2e-10 67.8 80 46.2
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 6.2e-10 67.8 80 46.2
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 8.1e-10 67.4 119 37.0
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 8.1e-10 67.4 119 37.0
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 8.1e-10 67.4 119 37.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.1e-10 67.4 99 41.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.8e-09 66.2 101 37.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.4e-09 65.9 102 43.1
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.0e-09 65.1 119 36.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.0e-09 65.1 98 37.8
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.0e-09 65.1 112 37.5
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.0e-09 65.1 98 37.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 4.0e-09 65.1 78 43.6
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 5.3e-09 64.7 72 55.6
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 5.3e-09 64.7 98 42.9
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.3e-09 64.7 114 38.6
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 5.3e-09 64.7 107 36.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.0e-09 63.9 114 38.6
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 9.0e-09 63.9 68 44.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 9.0e-09 63.9 107 36.4
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-08 63.5 72 51.4
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.5e-08 63.2 68 41.2
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-08 63.2 102 40.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.0e-08 62.8 87 43.7
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.0e-08 62.8 124 35.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 102 40.2
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.0e-08 62.8 119 35.3
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.0e-08 62.8 74 47.3
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.0e-08 62.8 79 43.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 3.4e-08 62.0 119 34.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.4e-08 62.0 94 41.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.5e-08 61.6 98 42.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 5.8e-08 61.2 113 35.4
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.8e-08 61.2 120 35.8
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 9.9e-08 60.5 101 43.6
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-07 60.1 96 39.6
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.7e-07 59.7 78 41.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-07 59.3 113 35.4
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 2.9e-07 58.9 124 33.9
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 3.8e-07 58.5 86 39.5
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.9e-07 58.2 113 35.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.9e-07 58.2 113 35.4
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 4.9e-07 58.2 66 48.5
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 4.9e-07 58.2 55 58.2
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.9e-07 58.2 90 40.0
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 8.4e-07 57.4 113 34.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 8.4e-07 57.4 113 34.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.4e-07 57.4 88 37.5
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.1e-06 57.0 113 35.4
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.1e-06 57.0 65 47.7
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.9e-06 56.2 61 42.6
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.4e-06 55.8 112 36.6
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.2e-06 55.5 104 32.7
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.2e-06 55.1 70 41.4
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.5e-06 54.7 90 35.6
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 5.5e-06 54.7 85 37.6
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 5.5e-06 54.7 70 44.3
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 7.1e-06 54.3 64 45.3
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.1e-06 54.3 110 35.5
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 7.1e-06 54.3 64 46.9


User provided reference genes

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