Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 9.1e-190 666.8 344 100.0
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 8.0e-170 600.5 342 90.1
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.3e-138 496.9 336 75.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 3.2e-134 482.3 342 75.4
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 6.2e-130 468.0 346 70.2
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.8e-124 449.9 344 68.6
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 8.2e-122 441.0 324 68.2
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.9e-119 432.6 312 70.5
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.9e-119 432.6 315 69.8
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 8.4e-119 431.0 347 63.4
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.5e-118 429.5 314 69.1
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.2e-118 429.1 347 64.3
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 5.5e-118 428.3 314 69.1
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 2.7e-117 426.0 324 66.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 6.1e-117 424.9 343 64.4
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.8e-116 423.3 333 64.3
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-116 423.3 333 64.3
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 6.7e-116 421.4 324 65.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 6.7e-116 421.4 324 65.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 6.7e-116 421.4 324 65.4
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.9e-115 419.9 338 64.2
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-114 417.2 316 65.8
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.7e-114 415.6 314 67.2
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.7e-114 415.6 314 67.2
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.7e-114 415.6 314 67.2
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 3.7e-106 389.0 331 59.8
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.1e-105 385.6 336 59.5
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 2.0e-104 383.3 334 59.3
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 3.4e-104 382.5 338 57.7
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 4.5e-104 382.1 331 58.6
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.9e-104 381.7 333 58.9
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.7e-103 380.2 336 57.7
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.8e-103 379.0 343 60.1
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 3.2e-102 375.9 341 56.6
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.6e-101 372.5 333 58.0
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 4.7e-101 372.1 344 58.1
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.7e-101 372.1 334 55.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.3e-100 369.8 343 58.3
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.3e-100 369.8 348 54.9
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 3.0e-100 369.4 343 58.3
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 5.1e-100 368.6 331 56.2
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.0e-99 366.7 311 57.9
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.0e-99 366.7 315 58.1
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.6e-99 366.3 335 54.9
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.4e-99 365.5 335 57.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 7.4e-99 364.8 331 55.6
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 9.7e-99 364.4 341 55.1
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.7e-98 363.6 340 56.5
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.8e-98 362.8 317 57.4
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 4.8e-98 362.1 337 57.0
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 8.2e-98 361.3 337 54.6
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 3.1e-97 359.4 341 54.3
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.1e-97 359.4 332 56.3
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 5.3e-97 358.6 332 54.5
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 5.3e-97 358.6 332 54.8
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 9.1e-97 357.8 345 55.7
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 9.1e-97 357.8 345 55.7
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 9.1e-97 357.8 329 55.0
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 9.1e-97 357.8 343 54.8
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 1.2e-96 357.5 331 54.1
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.6e-96 356.3 335 55.8
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.5e-96 355.9 331 55.3
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 5.9e-96 355.1 310 57.4
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 7.7e-96 354.8 340 52.9
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 7.7e-96 354.8 314 57.6
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-95 353.6 328 56.1
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.7e-95 353.6 314 58.3
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.7e-95 353.6 314 58.3
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.2e-95 353.2 332 54.8
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.8e-95 352.4 336 53.9
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 8.5e-95 351.3 331 54.4
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.1e-94 350.9 334 54.5
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.1e-94 350.9 331 55.9
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.9e-94 350.1 317 56.8
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 4.2e-94 349.0 342 53.5
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 5.5e-94 348.6 332 51.8
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 9.4e-94 347.8 333 55.9
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.6e-93 347.1 329 54.1
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.1e-93 346.7 335 55.5
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.7e-93 346.3 331 53.8
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.6e-93 345.9 314 55.4
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.6e-93 345.9 318 56.3
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 8.0e-93 344.7 324 54.9
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.4e-92 344.0 344 53.8
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.4e-92 344.0 333 53.8
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.4e-92 344.0 337 54.3
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.8e-92 343.6 336 53.9
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.0e-92 342.4 322 55.9
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.1e-91 340.9 336 53.3
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 2.6e-91 339.7 328 55.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.4e-91 339.0 318 55.3
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 7.5e-91 338.2 346 52.6
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 9.7e-91 337.8 343 49.9
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.3e-90 337.4 341 52.8
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.7e-90 337.0 317 53.9
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-90 336.7 331 52.3
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.2e-90 336.7 331 52.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 5.3e-89 332.0 321 53.6
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 7.0e-89 331.6 335 51.9
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.3e-87 327.4 332 51.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.3e-87 327.4 319 52.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 8.5e-87 324.7 332 50.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 1.9e-86 323.6 332 52.1
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.5e-86 323.2 341 48.7
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 2.7e-85 319.7 334 52.7
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 3.0e-84 316.2 317 51.7
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.8e-84 315.1 338 50.6
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-83 313.9 336 50.3
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 7.5e-83 311.6 341 49.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 9.8e-83 311.2 326 51.8
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.7e-82 310.5 335 50.7
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 4.1e-81 305.8 267 59.2
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 7.0e-81 305.1 275 56.4
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.7e-79 300.4 330 50.0
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 8.5e-79 298.1 336 48.5
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 3.2e-78 296.2 312 49.7
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 8.0e-77 291.6 315 50.5
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.0e-75 287.0 332 49.4
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 3.4e-75 286.2 331 47.1
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.4e-75 286.2 303 51.5
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 7.5e-75 285.0 252 56.7
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.8e-75 284.6 268 56.0
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 9.8e-75 284.6 332 44.6
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 9.8e-75 284.6 332 49.1
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.8e-74 283.1 329 48.9
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.1e-73 281.2 337 48.1
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 3.1e-73 279.6 329 42.2
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 4.1e-73 279.3 310 45.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.1e-73 279.3 315 45.4
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.9e-72 275.4 335 45.4
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.1e-70 271.2 335 44.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 5.6e-70 268.9 322 44.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 9.5e-70 268.1 264 53.8
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.6e-69 267.3 329 41.3
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.6e-69 266.2 335 43.9
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.1e-69 265.4 322 42.5
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 6.1e-69 265.4 350 42.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.4e-68 264.2 271 53.5
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 3.0e-68 263.1 331 43.8
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 3.4e-67 259.6 334 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.4e-65 253.4 328 40.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.4e-65 253.4 278 48.6
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.6e-64 249.2 264 49.2
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.3e-63 247.7 393 38.4
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.7e-63 247.3 257 50.6
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 8.6e-63 245.0 189 63.0
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 9.5e-62 241.5 189 63.0
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.3e-60 236.9 189 60.8
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.4e-59 232.6 210 55.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 9.8e-59 231.5 178 59.6
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.2e-57 224.9 189 58.2
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.6e-55 218.4 190 56.8
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.5e-54 216.9 313 43.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.6e-48 196.1 182 56.0
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.8e-48 195.3 184 55.4
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 6.6e-47 192.2 331 37.5
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.2e-45 188.0 190 48.4
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 4.0e-44 183.0 237 45.1
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 1.1e-41 174.9 210 44.3
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 5.6e-38 162.5 153 52.3
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 8.1e-37 158.7 109 68.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.1e-36 158.3 144 57.6
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-32 144.1 335 30.1
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 7.3e-30 135.6 172 45.3
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 9.0e-28 128.6 163 46.6
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-27 126.3 104 61.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 7.1e-25 119.0 315 30.8
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-24 117.9 92 62.0
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 6.0e-24 115.9 86 62.8
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 3.1e-20 103.6 94 54.3
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 4.0e-20 103.2 75 61.3
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.4e-17 94.0 75 65.3
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 4.6e-16 89.7 80 56.2
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.0e-15 88.6 81 54.3
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 3.3e-14 83.6 76 53.9
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.1e-13 80.9 57 66.7
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-08 65.1 74 45.9
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-07 61.6 74 48.6
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 7.4e-06 55.8 49 57.1


User provided reference genes

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