Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 0.0e+00 1138.6 579 100.0
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 1.0e-289 999.6 581 88.8
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.8e-255 885.2 592 78.5
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 1.4e-246 856.3 584 76.5
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 2.0e-245 852.4 596 77.5
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 2.5e-232 808.9 596 74.7
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 3.1e-222 775.4 589 72.5
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.2e-221 773.5 589 72.2
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 1.7e-220 769.6 588 72.4
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 2.5e-216 755.7 573 72.1
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 9.0e-214 747.3 586 71.2
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 2.1e-191 672.9 620 63.2
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 4.8e-159 565.5 399 74.2
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.3e-140 503.4 611 51.1
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 4.1e-134 482.6 586 51.4
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.6e-109 401.0 629 45.6
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.6e-109 401.0 629 45.6
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 1.0e-108 398.3 634 45.6
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 1.3e-108 397.9 636 45.6
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 4.7e-106 389.4 647 44.8
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 6.2e-106 389.0 639 44.3
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.2e-104 384.8 636 44.2
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.7e-103 380.9 629 45.2
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.1e-101 374.0 635 42.8
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.0e-100 371.7 639 43.3
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 6.6e-100 369.0 639 44.3
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.1e-99 368.2 646 43.0
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 2.5e-99 367.1 628 43.3
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 4.3e-99 366.3 633 42.8
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 1.3e-98 364.8 636 42.6
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.8e-97 360.9 666 41.3
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 2.4e-94 350.5 633 41.9
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.2e-94 349.7 649 40.7
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 2.1e-93 347.4 651 39.2
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 2.7e-93 347.1 648 40.4
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 4.6e-93 346.3 636 41.0
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 4.6e-93 346.3 660 41.1
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 6.0e-93 345.9 664 40.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 2.3e-92 344.0 648 41.2
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 5.1e-92 342.8 652 41.0
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 6.6e-92 342.4 650 40.0
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.1e-91 341.7 646 40.7
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 2.5e-91 340.5 636 41.8
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 2.8e-90 337.0 642 42.2
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.8e-89 334.3 627 41.9
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 2.6e-88 330.5 660 41.1
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 3.4e-88 330.1 635 41.3
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 7.6e-88 328.9 640 41.1
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 1.1e-86 325.1 650 39.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 4.2e-86 323.2 622 40.2
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.2e-85 321.6 686 38.6
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 1.8e-84 317.8 639 40.5
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 6.7e-84 315.8 645 40.5
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 2.5e-83 313.9 635 39.2
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 3.3e-83 313.5 632 41.3
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.3e-82 311.6 628 38.9
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 3.7e-82 310.1 631 39.8
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 4.8e-82 309.7 654 37.6
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 4.8e-82 309.7 641 39.5
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 8.1e-82 308.9 635 40.6
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 3.1e-81 307.0 629 38.8
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 3.1e-81 307.0 636 39.0
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 4.0e-81 306.6 643 39.3
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.4e-80 303.5 638 40.3
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 5.8e-80 302.8 626 39.5
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 1.0e-79 302.0 655 40.0
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 4.9e-79 299.7 631 39.0
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 4.9e-79 299.7 650 38.8
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 3.2e-78 297.0 653 37.8
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.1e-77 294.3 627 38.6
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.7e-77 293.9 643 40.4
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 3.5e-77 293.5 654 38.7
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 6.0e-77 292.7 627 39.4
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 6.0e-77 292.7 637 37.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 1.0e-76 292.0 631 39.0
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 1.8e-76 291.2 607 38.6
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 3.0e-76 290.4 546 41.0
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 3.0e-76 290.4 631 38.2
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 3.9e-76 290.0 636 39.8
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 6.7e-76 289.3 600 39.7
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 6.7e-76 289.3 636 39.8
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 2.5e-75 287.3 643 39.3
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 3.7e-74 283.5 621 39.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 6.3e-74 282.7 647 38.8
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.1e-73 282.0 643 40.0
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 3.1e-73 280.4 648 39.2
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 5.3e-73 279.6 439 44.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 2.6e-72 277.3 474 40.7
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 1.0e-71 275.4 633 37.8
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.3e-71 275.0 639 36.8
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.1e-70 271.9 684 36.5
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.1e-69 267.7 706 36.1
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 2.3e-68 264.2 608 37.5
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 2.3e-68 264.2 603 37.8
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 6.7e-68 262.7 597 38.4
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 2.8e-66 257.3 587 38.2
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.8e-66 257.3 498 40.0
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 6.9e-65 252.7 430 42.1
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.0e-64 251.1 631 35.7
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 1.9e-62 244.6 620 38.1
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 7.2e-62 242.7 652 35.4
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 6.1e-61 239.6 611 36.3
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 1.0e-60 238.8 614 36.2
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.3e-60 237.7 662 35.3
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 5.7e-59 233.0 601 36.1
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.7e-58 231.5 510 36.7
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 6.3e-58 229.6 452 38.7
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 6.9e-57 226.1 664 33.1
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.0e-56 224.6 638 35.4
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 2.0e-56 224.6 711 32.9
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.5e-55 219.5 466 37.6
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 6.5e-55 219.5 474 37.1
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 1.9e-54 218.0 410 38.0
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 6.1e-53 213.0 644 33.9
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 6.1e-53 213.0 622 36.0
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.8e-49 201.4 463 36.3
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 2.0e-48 198.0 757 29.7
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 4.5e-48 196.8 454 36.3
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 8.5e-47 192.6 364 42.0
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.2e-46 190.7 470 34.9
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 4.7e-37 160.2 620 30.6
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 5.2e-36 156.8 718 30.1
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 3.4e-35 154.1 624 31.7
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 5.7e-35 153.3 141 61.0
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 3.7e-34 150.6 134 61.2
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.7e-32 144.4 221 43.0
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 3.6e-29 134.0 585 28.7
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 4.9e-26 123.6 196 48.0
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.0e-20 105.9 729 25.1
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 1.2e-19 102.4 402 28.6
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 2.9e-18 97.8 118 51.7
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 2.4e-17 94.7 119 51.3
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 7.0e-17 93.2 109 50.5
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 4.4e-11 73.9 115 41.7
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.1e-06 59.3 75 49.3
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 9.5e-06 56.2 248 31.0


User provided reference genes

Program Settings