Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 1.8e-142 509.2 255 100.0
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.5e-136 489.6 256 93.4
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 5.6e-128 461.1 250 90.4
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 3.8e-124 448.4 255 85.9
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 2.4e-118 429.1 251 83.7
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 5.9e-117 424.5 251 83.3
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 5.9e-117 424.5 251 83.3
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 2.9e-116 422.2 251 83.3
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 5.5e-115 417.9 251 82.9
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 9.4e-115 417.2 253 82.2
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 1.3e-100 370.2 252 72.6
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 1.6e-82 310.1 223 63.2
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 3.0e-81 305.8 229 65.1
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 2.6e-80 302.8 252 60.3
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 7.5e-80 301.2 210 64.3
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.3e-79 300.4 226 63.3
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 3.7e-79 298.9 224 61.6
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 4.8e-79 298.5 226 63.3
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 6.3e-79 298.1 207 64.7
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.8e-78 296.6 216 67.1
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 1.6e-77 293.5 216 63.4
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 2.0e-77 293.1 224 63.8
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 3.5e-77 292.4 232 59.9
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 3.5e-77 292.4 232 59.9
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 3.5e-77 292.4 228 59.6
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 4.5e-77 292.0 232 61.2
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 7.7e-77 291.2 229 62.0
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 1.0e-76 290.8 219 60.7
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 1.3e-76 290.4 219 62.1
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 1.7e-76 290.0 207 64.3
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 2.3e-76 289.7 223 61.4
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 2.9e-76 289.3 235 59.1
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 2.9e-76 289.3 219 62.1
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 5.0e-76 288.5 224 59.4
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 6.6e-76 288.1 230 63.9
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 6.6e-76 288.1 230 63.9
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 8.6e-76 287.7 252 57.9
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 8.6e-76 287.7 229 61.1
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 1.1e-75 287.3 220 60.5
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.1e-75 287.3 220 60.5
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.1e-75 287.3 220 60.5
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 1.1e-75 287.3 221 61.5
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 1.5e-75 287.0 222 61.7
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 3.3e-75 285.8 239 59.4
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 4.2e-75 285.4 230 63.5
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 4.2e-75 285.4 219 60.7
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 5.5e-75 285.0 224 58.9
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 7.2e-75 284.6 208 65.4
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 9.5e-75 284.3 225 60.4
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 9.5e-75 284.3 217 62.2
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 1.6e-74 283.5 218 61.0
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.7e-74 282.0 221 59.7
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.4e-73 280.4 221 59.7
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 1.4e-73 280.4 226 58.4
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 1.8e-73 280.0 210 61.4
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 5.2e-73 278.5 217 59.9
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 8.9e-73 277.7 227 56.4
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 1.5e-72 276.9 231 54.1
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 2.0e-72 276.6 239 58.6
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 2.6e-72 276.2 218 59.2
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 3.4e-72 275.8 220 60.0
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 3.4e-72 275.8 231 56.3
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 3.4e-72 275.8 224 56.2
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 7.5e-72 274.6 210 62.4
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 9.8e-72 274.2 216 60.6
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.7e-71 273.5 217 62.2
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 1.7e-71 273.5 217 57.1
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 2.8e-71 272.7 239 58.2
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 3.7e-71 272.3 222 61.3
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 4.9e-71 271.9 224 56.2
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 4.9e-71 271.9 226 58.4
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 6.3e-71 271.6 216 59.3
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 6.3e-71 271.6 221 57.5
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 6.3e-71 271.6 239 57.7
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 8.3e-71 271.2 219 61.2
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 1.1e-70 270.8 236 58.9
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 1.4e-70 270.4 219 58.0
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 2.4e-70 269.6 227 59.5
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 4.1e-70 268.9 219 61.2
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 5.4e-70 268.5 228 58.8
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 5.4e-70 268.5 224 58.0
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 7.0e-70 268.1 248 54.4
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 3.5e-69 265.8 230 55.2
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 4.5e-69 265.4 168 67.9
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 5.9e-69 265.0 300 46.3
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 7.8e-69 264.6 225 61.8
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 1.0e-68 264.2 230 55.2
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 1.3e-68 263.8 231 55.8
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 2.9e-68 262.7 218 57.8
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 3.9e-68 262.3 212 61.3
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 8.6e-68 261.2 234 56.4
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 1.5e-67 260.4 240 51.7
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 1.9e-67 260.0 243 51.4
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 1.9e-67 260.0 227 53.3
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 3.3e-67 259.2 239 54.8
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 5.6e-67 258.5 212 59.9
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 7.3e-67 258.1 224 55.8
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 4.7e-66 255.4 231 52.8
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 4.0e-65 252.3 217 58.1
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 5.2e-65 251.9 229 55.5
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 6.8e-65 251.5 218 55.0
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 6.8e-65 251.5 219 57.1
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.0e-64 250.0 247 55.9
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 1.1e-62 244.2 182 59.9
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 1.2e-61 240.7 207 56.0
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 2.0e-61 240.0 221 52.9
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 4.6e-61 238.8 232 49.6
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 6.0e-61 238.4 221 53.4
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 1.0e-60 237.7 206 59.7
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 6.2e-58 228.4 224 50.4
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 2.3e-57 226.5 210 53.3
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.2e-56 224.2 201 53.7
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 4.4e-56 222.2 251 51.0
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 1.9e-54 216.9 233 47.6
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 7.8e-53 211.5 211 49.3
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 1.2e-50 204.1 145 60.0
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 2.1e-50 203.4 226 49.1
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 2.0e-48 196.8 212 49.5
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 7.1e-46 188.3 201 46.3
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.4e-41 174.1 152 57.2
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 1.3e-39 167.5 146 52.7
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 1.3e-36 157.5 129 55.8
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 1.5e-35 154.1 142 54.2
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 5.3e-33 145.6 165 46.1
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 4.4e-32 142.5 154 44.2
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 6.4e-31 138.7 153 43.1
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 3.5e-29 132.9 144 45.1
Sp2g25370 Schrenkiella parvula HOM05D005683 ORTHO05D006958 1.2e-24 117.9 85 72.9
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 1.8e-20 104.0 147 41.5
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 2.1e-18 97.1 79 51.9
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 3.8e-15 86.3 105 47.6
BcaB05g23633 Brassica carinata HOM05D001086 ORTHO05D001112 1.4e-14 84.3 92 51.1
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 4.3e-11 72.8 175 29.1
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 7.4e-11 72.0 171 32.7
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 8.2e-10 68.6 148 29.7
Os01g0825900 Oryza sativa ssp. japonica HOM05D002715 ORTHO05D002996 1.2e-08 64.7 144 30.6
Eucgr.B02945 Eucalyptus grandis HOM05D000414 ORTHO05D000276 1.7e-07 60.8 126 28.6
PGR102G0438 Punica granatum HOM05D000414 ORTHO05D000276 5.0e-07 59.3 167 26.9
SEGI_20323 Sequoiadendron giganteum HOM05D002715 ORTHO05D002996 8.4e-07 58.5 140 28.6
SMO230G0095 Selaginella moellendorffii HOM05D002715 ORTHO05D002996 1.4e-06 57.8 140 29.3
Pp3c18_8110 Physcomitrium patens HOM05D002715 ORTHO05D002996 1.9e-06 57.4 151 27.2
Peaxi162Scf00575g00046 Petunia axillaris HOM05D000414 ORTHO05D000276 3.2e-06 56.6 126 29.4
Sed0007955 Sechium edule HOM05D000212 ORTHO05D002824 3.2e-06 56.6 134 27.6
THA.LOC104803233 Tarenaya hassleriana HOM05D000414 ORTHO05D000276 3.2e-06 56.6 126 29.4
HanXRQChr07g0203561 Helianthus annuus HOM05D002715 ORTHO05D002996 4.2e-06 56.2 132 31.8
Sabra16G0129000 Salix brachista HOM05D002715 ORTHO05D002996 5.5e-06 55.8 139 27.3
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 5.5e-06 55.8 144 27.8
Gohir.A02G172800 Gossypium hirsutum HOM05D000212 ORTHO05D002824 7.2e-06 55.5 153 26.8


User provided reference genes

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