Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 5.7e-242 840.5 425 100.0
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 6.1e-220 767.3 425 92.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.4e-210 734.6 425 86.8
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 4.0e-203 711.4 426 84.7
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.0e-202 709.1 425 82.6
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 9.2e-192 673.7 427 80.6
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 1.6e-183 646.4 431 77.5
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.6e-183 646.4 431 77.7
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.5e-181 639.8 433 76.4
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 4.5e-178 628.2 429 77.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 3.5e-175 618.6 433 75.5
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 6.9e-171 604.4 426 72.8
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 2.8e-164 582.4 427 73.1
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.7e-161 573.2 427 68.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.2e-159 567.0 435 70.8
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.1e-157 560.5 417 72.4
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 4.5e-146 521.9 361 76.2
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.0e-122 443.4 342 71.6
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 3.4e-117 426.0 426 52.1
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.3e-116 424.1 426 51.2
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.7e-116 423.7 431 52.0
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 4.8e-116 422.2 427 50.8
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 9.1e-115 417.9 429 49.9
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 4.5e-114 415.6 426 50.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 2.1e-111 406.8 430 49.1
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.5e-109 400.6 427 48.9
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 6.3e-108 395.2 426 48.6
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 5.4e-107 392.1 428 48.6
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 5.4e-107 392.1 428 49.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 7.0e-107 391.7 428 47.2
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 6.6e-105 385.2 427 47.1
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.1e-104 384.4 429 49.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 5.6e-104 382.1 425 46.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.6e-103 379.4 425 46.8
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.4e-102 377.5 447 46.8
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 3.1e-102 376.3 376 51.6
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.2e-102 375.6 427 46.1
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.2e-101 374.4 425 45.4
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.2e-101 374.4 426 45.8
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.5e-101 371.7 425 47.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.3e-100 370.9 426 45.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.3e-100 370.9 427 45.2
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 4.9e-100 369.0 420 46.4
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 6.4e-100 368.6 426 47.7
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.4e-99 367.5 426 45.5
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 4.1e-99 365.9 425 46.1
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 5.4e-99 365.5 428 48.1
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 9.2e-99 364.8 426 45.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 9.2e-99 364.8 427 44.5
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.6e-98 364.0 428 45.8
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 4.6e-98 362.5 376 50.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 8.6e-97 358.2 428 51.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 8.6e-97 358.2 423 44.9
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.5e-96 357.5 428 46.0
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 5.6e-96 355.5 426 45.5
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 2.8e-95 353.2 392 47.7
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.6e-95 352.8 425 46.4
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 4.7e-95 352.4 420 46.4
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 2.3e-94 350.1 424 43.9
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 4.0e-94 349.4 426 43.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.9e-94 348.2 424 45.0
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.5e-93 347.4 434 44.2
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 2.6e-93 346.7 426 45.3
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 4.4e-93 345.9 390 47.4
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 7.5e-93 345.1 424 44.8
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.3e-92 344.4 427 43.8
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-92 343.6 421 44.7
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-92 342.8 424 44.3
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 8.3e-92 341.7 430 47.0
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.9e-91 340.5 430 46.7
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.9e-91 340.5 420 46.0
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 3.2e-91 339.7 343 57.4
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 9.2e-91 338.2 420 45.7
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.5e-90 336.3 426 43.7
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 6.0e-90 335.5 425 44.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.8e-90 335.1 422 45.7
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-89 334.3 422 46.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.3e-89 333.6 420 44.8
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 3.0e-89 333.2 421 44.4
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 5.1e-89 332.4 438 46.3
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.1e-89 332.4 420 44.3
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.6e-89 332.0 430 45.8
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.5e-88 330.9 425 43.5
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.5e-88 330.9 439 46.2
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.5e-88 330.9 427 45.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.3e-88 329.3 422 43.4
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.8e-87 326.6 394 45.4
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.1e-86 324.7 427 45.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 8.9e-86 321.6 429 42.4
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.8e-85 318.9 422 43.8
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 9.9e-85 318.2 422 44.1
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.9e-84 316.6 373 45.6
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.4e-83 314.3 364 45.6
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 9.2e-83 311.6 421 42.0
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 3.5e-82 309.7 426 41.5
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.3e-81 307.8 399 46.6
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.9e-80 303.9 425 41.4
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 4.3e-80 302.8 466 37.6
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.5e-80 301.6 422 41.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.1e-79 300.4 463 40.6
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 3.6e-79 299.7 466 40.6
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.4e-78 297.0 397 42.1
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.6e-77 293.5 422 44.3
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 4.6e-74 282.7 385 38.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.0e-73 281.6 424 40.6
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.3e-72 276.6 421 40.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 5.3e-70 269.2 331 45.3
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.0e-65 255.0 429 36.6
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.9e-65 253.1 373 40.2
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 9.6e-64 248.4 430 35.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.1e-63 247.3 403 37.5
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.4e-62 243.8 430 35.3
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.2e-59 233.4 373 35.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.3e-56 223.0 344 36.3
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 5.6e-56 222.6 215 55.8
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.0e-52 211.8 392 34.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.5e-45 188.0 467 30.8
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 6.5e-44 182.6 189 49.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 3.0e-41 173.7 392 33.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.8e-38 164.5 182 50.5
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.4e-38 164.1 258 39.9
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 3.4e-37 160.2 461 29.1
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 3.4e-37 160.2 448 28.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.9e-37 159.5 206 41.7
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 7.7e-37 159.1 437 29.7
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.5e-35 154.1 439 30.1
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.4e-30 137.5 402 29.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.7e-28 131.3 438 28.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.8e-25 121.3 209 38.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.5e-24 118.2 199 39.2
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.2e-23 114.4 209 37.8
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 2.2e-23 114.4 143 40.6
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.6e-21 107.5 227 33.5
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-20 102.4 274 31.4
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 8.5e-12 75.9 76 46.1
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 9.4e-11 72.4 77 42.9
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.2e-10 72.0 74 45.9
C08p48240 Brassica napus HOM05D005393 ORTHO05D006257 7.5e-08 62.8 81 51.9
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.7e-07 61.6 61 47.5
BolC8t49084H Brassica oleracea HOM05D000013 ORTHO05D000011 3.7e-07 60.5 39 74.4
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-06 58.9 59 54.2


User provided reference genes

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