Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11240 Arabidopsis thaliana HOM05D006902 ORTHO05D008468 9.4e-86 320.5 201 100.0
AL1G22260 Arabidopsis lyrata HOM05D006902 ORTHO05D008468 3.5e-72 275.4 201 89.6
Carub.0001s1082 Capsella rubella HOM05D006902 ORTHO05D008468 4.7e-61 238.4 200 82.0
Sp1g09900 Schrenkiella parvula HOM05D006902 ORTHO05D008468 1.7e-58 229.9 195 82.1
Thhalv10008794m.g Eutrema salsugineum HOM05D006902 ORTHO05D008468 5.0e-55 218.4 204 76.0
A06p07900 Brassica napus HOM05D006902 ORTHO05D008468 1.1e-54 217.2 194 75.3
BraA06t23989Z Brassica rapa HOM05D006902 ORTHO05D008468 1.1e-54 217.2 194 75.3
BolC5t29692H Brassica oleracea HOM05D006902 ORTHO05D008468 2.8e-53 212.6 193 74.6
C05p09500 Brassica napus HOM05D006902 ORTHO05D008468 8.0e-53 211.1 193 74.1
CARHR011470 Cardamine hirsuta HOM05D006902 ORTHO05D008468 3.1e-52 209.1 193 74.6
BcaNung04470 Brassica carinata HOM05D006902 ORTHO05D008468 2.2e-50 203.0 193 73.1
BolC8t49055H Brassica oleracea HOM05D006902 ORTHO05D008468 1.2e-43 180.6 198 67.2
BcaC05g24986 Brassica carinata HOM05D006902 ORTHO05D008468 1.3e-42 177.2 134 77.6
Aa31LG1G3550 Aethionema arabicum HOM05D006902 ORTHO05D008468 8.3e-42 174.5 196 67.3
BcaC07g38645 Brassica carinata HOM05D006902 ORTHO05D008468 5.4e-41 171.8 197 66.0
THA.LOC104809549 Tarenaya hassleriana HOM05D006902 ORTHO05D008468 4.0e-28 129.0 203 57.1
Thhalv10015657m.g Eutrema salsugineum HOM05D006902 ORTHO05D008468 5.4e-25 118.6 99 75.8
Atru.chr10.2001 Acer truncatum HOM05D006902 ORTHO05D008468 7.1e-25 118.2 186 48.4
Rhsim02G0120100 Rhododendron simsii HOM05D006902 ORTHO05D008468 7.1e-25 118.2 195 47.7
BcaC05g24999 Brassica carinata HOM05D006902 ORTHO05D008468 1.6e-24 117.1 106 75.5
Hma1.2p1_0144F.1_g064740 Hydrangea macrophylla HOM05D006902 ORTHO05D008468 8.7e-23 111.3 200 49.5
Sed0006938 Sechium edule HOM05D006902 ORTHO05D008468 1.1e-22 110.9 194 52.1
PGSC0003DMG402010824 Solanum tuberosum HOM05D006902 ORTHO05D008468 1.1e-22 110.9 160 50.0
CsaV3_4G028920 Cucumis sativus L. HOM05D006902 ORTHO05D008468 1.5e-22 110.5 187 52.9
ClCG04G003630 Citrullus lanatus HOM05D006902 ORTHO05D008468 2.5e-22 109.8 207 53.6
MD10G1302800 Malus domestica HOM05D006902 ORTHO05D008468 2.5e-22 109.8 202 47.0
Sopen10g004990 Solanum pennellii HOM05D006902 ORTHO05D008468 2.5e-22 109.8 160 49.4
BraA08t35275Z Brassica rapa HOM05D006902 ORTHO05D008468 3.3e-22 109.4 84 79.8
RcHm_v2.0_Chr5g0006551 Rosa chinensis HOM05D006902 ORTHO05D008468 4.3e-22 109.0 187 51.9
A08p33590 Brassica napus HOM05D006902 ORTHO05D008468 9.6e-22 107.8 84 78.6
Dinv40499 Davidia involucrata HOM05D006902 ORTHO05D008468 8.1e-21 104.8 171 52.0
Actinidia24062 Actinidia chinensis HOM05D006902 ORTHO05D008468 2.4e-20 103.2 199 49.7
FvH4_1g04320 Fragaria vesca HOM05D006902 ORTHO05D008468 2.4e-20 103.2 188 51.1
Lsat_1_v5_gn_4_57121 Lactuca sativa HOM05D006902 ORTHO05D008468 5.3e-20 102.1 190 51.1
FvH4_3g04070 Fragaria vesca HOM05D006902 ORTHO05D008468 1.2e-19 100.9 187 44.9
Prupe.4G036300 Prunus persica HOM05D006902 ORTHO05D008468 1.2e-19 100.9 186 53.8
Potri.011G043400 Populus trichocarpa HOM05D006902 ORTHO05D008468 1.5e-19 100.5 180 43.9
FAN28G0433 Fragaria x ananassa HOM05D006902 ORTHO05D008468 2.0e-19 100.1 187 49.2
CANSAT56G2140 Cannabis sativa HOM05D006902 ORTHO05D008468 7.6e-19 98.2 186 45.7
DCAR_008067 Daucus carota HOM05D006902 ORTHO05D008468 9.9e-19 97.8 188 52.1
Migut.H01513 Erythranthe guttata HOM05D006902 ORTHO05D008468 2.9e-18 96.3 188 46.3
Sabra11G0030000 Salix brachista HOM05D006902 ORTHO05D008468 3.8e-18 95.9 194 41.8
Potri.004G035200 Populus trichocarpa HOM05D006902 ORTHO05D008468 4.9e-18 95.5 172 42.4
Oeu038228.1 Olea europaea HOM05D006902 ORTHO05D008468 2.4e-17 93.2 181 40.9
Aqoxy7G03119 Aquilegia oxysepala HOM05D006902 ORTHO05D008468 4.2e-17 92.4 184 47.8
QL03p053069 Quercus lobata HOM05D006902 ORTHO05D008468 4.2e-17 92.4 173 54.9
Nn8g40519 Nelumbo nucifera HOM05D006902 ORTHO05D008468 1.2e-16 90.9 183 40.4
SalBow7G0974 Salvia bowleyana HOM05D006902 ORTHO05D008468 2.1e-16 90.1 171 49.7
Duzib235G0611 Durio zibethinus HOM05D000306 ORTHO05D000410 2.7e-16 89.7 203 43.8
PSO063G2673 Papaver somniferum HOM05D006902 ORTHO05D008468 4.6e-16 89.0 192 47.4
PSO782G4966 Papaver somniferum HOM05D006902 ORTHO05D008468 4.6e-16 89.0 192 47.9
Gohir.A05G165200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 7.8e-16 88.2 203 42.9
Gohir.D05G168200 Gossypium hirsutum HOM05D006902 ORTHO05D008468 1.3e-15 87.4 205 43.9
Gorai.009G173300 Gossypium raimondii HOM05D006902 ORTHO05D008468 1.7e-15 87.0 203 43.8
ECA234G0685 Erigeron canadensis HOM05D006902 ORTHO05D008468 3.0e-15 86.3 157 54.1
Thecc.06G198400 Theobroma cacao HOM05D006902 ORTHO05D008468 6.6e-15 85.1 192 46.9
HanXRQChr17g0551071 Helianthus annuus HOM05D006902 ORTHO05D008468 8.7e-15 84.7 164 53.0
Manes.16G021000 Manihot esculenta HOM05D006902 ORTHO05D008468 1.5e-14 84.0 182 49.5
MSTRG.14679 Avicennia marina HOM05D006902 ORTHO05D008468 3.3e-14 82.8 178 44.4
TWI38G1087 Tripterygium wilfordii HOM05D006902 ORTHO05D008468 4.3e-14 82.4 185 43.2
vmacro15868 Vaccinium macrocarpon HOM05D006902 ORTHO05D008468 4.3e-14 82.4 266 36.5
Lj4g0003242 Lotus japonicus HOM05D006902 ORTHO05D008468 1.6e-13 80.5 177 45.2
Sc05g0008060 Simmondsia chinensis HOM05D006902 ORTHO05D008468 1.6e-13 80.5 191 45.0
Sc05g0010000 Simmondsia chinensis HOM05D006902 ORTHO05D008468 1.6e-13 80.5 191 45.0
Ciclev10016776m.g Citrus clementina HOM05D006902 ORTHO05D008468 1.1e-12 77.8 180 46.1
TPR.G32415 Trifolium pratense HOM05D006902 ORTHO05D008468 2.4e-12 76.6 176 44.3
C08p14170 Brassica napus HOM05D006902 ORTHO05D008468 4.0e-12 75.9 50 84.0
AUR62014725 Chenopodium quinoa HOM05D006902 ORTHO05D008468 4.0e-12 75.9 180 45.0
Medtr4g090910 Medicago truncatula HOM05D006902 ORTHO05D008468 1.2e-11 74.3 171 45.6
Psat7g109600 Pisum sativum HOM05D006902 ORTHO05D008468 3.4e-11 72.8 186 46.8
Eucgr.D00710 Eucalyptus grandis HOM05D006902 ORTHO05D008468 4.5e-11 72.4 179 44.7
SGA_v2.0_scaffold159G37666 Striga asiatica HOM05D006902 ORTHO05D008468 4.5e-11 72.4 175 45.1
CiPaw.09G158500 Carya illinoinensis HOM05D006902 ORTHO05D008468 5.8e-11 72.0 171 49.1
Ca_18489_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 9.9e-11 71.2 175 42.3
Ca_29542_v3 Cicer arietinum L. HOM05D006902 ORTHO05D008468 9.9e-11 71.2 175 42.3
Cc02_g12510 Coffea canephora HOM05D006902 ORTHO05D008468 1.7e-10 70.5 180 47.2
COL.COLO4_31574 Corchorus olitorius HOM05D000306 ORTHO05D000410 1.7e-10 70.5 145 53.1
AUR62016906 Chenopodium quinoa HOM05D006902 ORTHO05D008468 2.2e-10 70.1 190 43.2
Peaxi162Scf00371g01024 Petunia axillaris HOM05D006902 ORTHO05D008468 2.9e-10 69.7 160 43.8
QL05p081948 Quercus lobata HOM05D006902 ORTHO05D008468 4.9e-10 68.9 173 49.1
arahy.Tifrunner.gnm1.ann1.EL94R1 Arachis hypogaea HOM05D006902 ORTHO05D008468 1.1e-09 67.8 155 45.2
Eucgr.L03594 Eucalyptus grandis HOM05D006902 ORTHO05D008468 1.1e-09 67.8 175 42.9
FAN25G0692 Fragaria x ananassa HOM05D006902 ORTHO05D008468 1.1e-09 67.8 151 45.0
Nitab4.5_0003223g0030 Nicotiana tabacum HOM05D006902 ORTHO05D008468 1.1e-09 67.8 185 44.9
Lalb_Chr16g0383411 Lupinus albus HOM05D006902 ORTHO05D008468 1.4e-09 67.4 184 44.6
Phvul.002G222700 Phaseolus vulgaris HOM05D006902 ORTHO05D008468 1.9e-09 67.0 155 45.8
arahy.Tifrunner.gnm1.ann1.G41NRI Arachis hypogaea HOM05D006902 ORTHO05D008468 7.1e-09 65.1 155 44.5
FAN11G0740 Fragaria x ananassa HOM05D000306 ORTHO05D000410 7.1e-09 65.1 92 45.7
ATR0580G203 Amborella trichopoda HOM05D006902 ORTHO05D008468 1.2e-08 64.3 175 37.1
EL10Ac8g20614 Beta vulgaris HOM05D006902 ORTHO05D008468 1.2e-08 64.3 189 42.3
Nitab4.5_0005936g0020 Nicotiana tabacum HOM05D006902 ORTHO05D008468 1.2e-08 64.3 163 45.4
Ah.14g088940 Amaranthus hybridus HOM05D006902 ORTHO05D008468 1.6e-08 63.9 186 41.4
VMungo0251G2276 Vigna mungo HOM05D006902 ORTHO05D008468 2.1e-08 63.5 155 43.9
MD05G1325000 Malus domestica HOM05D006902 ORTHO05D008468 7.9e-08 61.6 76 50.0
unitig_8.g3353 Utricularia gibba HOM05D006902 ORTHO05D008468 1.8e-07 60.5 152 45.4
Ah.09g236070 Amaranthus hybridus HOM05D006902 ORTHO05D008468 3.0e-07 59.7 188 38.8
C04p49870 Brassica napus HOM05D019923 ORTHO05D008468 3.9e-07 59.3 74 68.9
Cpa.g.c36644 Carica papaya HOM05D006902 ORTHO05D008468 1.1e-06 57.8 57 77.2
PGR004G1238 Punica granatum HOM05D006902 ORTHO05D008468 1.1e-06 57.8 178 39.9
Sabra04G0021000 Salix brachista HOM05D006902 ORTHO05D008468 2.5e-06 56.6 185 33.5
TAR625G0841 Trochodendron aralioides HOM05D006902 ORTHO05D008468 3.3e-06 56.2 99 42.4


User provided reference genes

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