Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 3.0e-116 422.2 266 100.0
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 4.7e-101 371.7 266 90.2
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 5.8e-75 285.0 266 73.7
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 1.1e-70 270.8 274 77.4
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 7.3e-70 268.1 274 70.1
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.5e-67 260.4 272 64.3
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 1.6e-61 240.4 279 71.0
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 1.6e-61 240.4 279 71.0
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 3.1e-60 236.1 281 56.2
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 6.4e-58 228.4 281 55.5
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 3.8e-50 202.6 274 57.3
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 4.9e-50 202.2 274 56.2
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 4.9e-50 202.2 274 56.2
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 7.9e-48 194.9 274 56.6
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 2.5e-46 189.9 275 56.4
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 5.5e-33 145.6 273 48.0
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 7.2e-33 145.2 272 44.5
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 1.6e-32 144.1 276 41.7
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 3.6e-32 142.9 272 44.5
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 2.3e-31 140.2 271 43.2
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 2.3e-31 140.2 271 43.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 2.3e-31 140.2 271 43.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 3.9e-31 139.4 272 42.3
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 6.7e-31 138.7 271 42.8
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.5e-30 137.5 273 41.0
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.5e-30 137.5 273 41.0
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 3.7e-29 132.9 286 40.2
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 4.8e-29 132.5 199 50.8
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 6.3e-29 132.1 208 49.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 6.3e-29 132.1 271 40.6
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 8.2e-29 131.7 189 52.9
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 1.5e-27 127.5 271 39.9
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 1.5e-27 127.5 271 39.9
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 1.5e-27 127.5 271 39.9
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.3e-26 124.4 304 40.8
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 3.8e-26 122.9 236 41.9
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 8.2e-21 105.1 220 41.8
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.1e-20 103.2 229 41.5
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 6.9e-20 102.1 211 44.1
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.0e-19 100.5 230 42.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.5e-19 99.4 212 43.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.9e-19 99.0 221 41.6
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.3e-18 97.8 211 44.5
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.2e-18 97.1 211 45.0
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.8e-18 96.3 211 44.5
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-17 94.4 221 40.3
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 5.7e-14 82.4 201 38.3
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 9.7e-14 81.6 210 39.5
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.7e-13 79.7 210 35.7
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.1e-12 76.3 187 38.5
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 5.3e-12 75.9 182 41.2
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 9.1e-12 75.1 214 37.9
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.2e-11 74.7 193 37.8
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.6e-11 74.3 221 36.2
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.6e-11 74.3 194 38.7
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.6e-11 73.6 185 40.5
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 7.7e-11 72.0 237 35.4
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.3e-10 71.2 215 36.3
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.7e-10 70.9 199 39.2
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.7e-10 70.9 199 39.2
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.7e-10 70.9 186 37.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.7e-10 70.9 186 37.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 2.2e-10 70.5 207 38.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 2.2e-10 70.5 195 38.5
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 5.0e-10 69.3 186 38.7
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 6.5e-10 68.9 207 35.7
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 8.5e-10 68.6 207 38.2
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 8.5e-10 68.6 218 37.2
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.5e-09 67.0 178 38.8
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 3.2e-09 66.6 196 41.3
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.2e-08 64.7 201 36.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 2.7e-08 63.5 219 36.5
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.7e-08 63.5 182 37.9
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 2.7e-08 63.5 193 38.3
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 3.6e-08 63.2 191 33.0
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 4.7e-08 62.8 210 34.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.1e-08 62.4 206 35.9
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 1.0e-07 61.6 195 39.0
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.4e-07 61.2 220 35.0
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.8e-07 60.8 202 35.6
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 3.0e-07 60.1 194 36.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 4.0e-07 59.7 211 32.7
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 6.7e-07 58.9 194 37.6
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.2e-06 58.2 199 33.2
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.2e-06 58.2 212 32.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.5e-06 57.8 201 36.8
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 1.5e-06 57.8 173 37.6
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.0e-06 57.4 208 34.6
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.0e-06 57.4 133 40.6
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.6e-06 57.0 204 33.3
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 4.4e-06 56.2 216 32.4
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 4.4e-06 56.2 184 35.3
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.4e-06 56.2 207 34.8
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 4.4e-06 56.2 200 34.5
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 7.5e-06 55.5 221 32.1
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 7.5e-06 55.5 186 34.9
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 7.5e-06 55.5 202 36.6


User provided reference genes

Program Settings