Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 7.4e-192 673.7 338 100.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.1e-190 669.8 338 99.1
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 4.0e-190 667.9 338 98.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.3e-190 667.5 338 98.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 5.3e-190 667.5 338 98.8
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 6.9e-190 667.2 338 98.2
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 9.9e-189 663.3 338 97.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.3e-188 662.9 338 97.9
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.7e-188 662.5 338 98.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.2e-188 662.1 335 98.5
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.9e-188 661.8 338 97.9
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 6.4e-188 660.6 335 98.5
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.4e-187 659.4 335 98.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.4e-187 659.4 335 98.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.4e-187 659.4 338 97.9
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 9.3e-187 656.8 338 97.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.0e-186 654.1 335 97.6
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.3e-185 652.9 335 97.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.0e-185 651.7 335 97.0
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 3.7e-183 644.8 351 93.2
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.4e-182 642.1 329 97.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.2e-179 631.3 338 93.5
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-177 626.7 338 92.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 7.4e-176 620.5 316 98.1
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.5e-168 595.5 364 85.4
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.1e-166 590.1 338 86.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 3.1e-166 588.6 336 86.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 4.1e-166 588.2 336 85.4
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 5.3e-166 587.8 336 86.0
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 5.3e-166 587.8 336 85.4
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 6.9e-166 587.4 333 85.6
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.5e-165 586.3 333 84.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.6e-165 585.5 339 85.8
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 4.5e-165 584.7 336 85.1
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 5.9e-165 584.3 339 84.7
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.0e-164 583.6 336 85.1
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.0e-164 583.6 336 84.8
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.3e-164 583.2 334 85.9
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.7e-164 582.8 333 83.8
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 2.2e-164 582.4 338 84.0
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.9e-164 582.0 333 85.6
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 2.9e-164 582.0 338 85.2
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.9e-164 582.0 336 84.8
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 3.8e-164 581.6 334 85.3
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 84.4
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 84.7
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.0e-164 581.3 333 85.0
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 6.5e-164 580.9 333 85.0
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 6.5e-164 580.9 333 85.0
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.5e-164 580.9 334 85.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.1e-163 580.1 333 85.6
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.1e-163 580.1 334 84.7
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.4e-163 579.7 333 84.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.9e-163 579.3 335 84.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.5e-163 578.9 335 84.2
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 3.2e-163 578.6 336 83.6
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 4.2e-163 578.2 338 84.9
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.5e-163 577.8 335 84.8
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 7.2e-163 577.4 334 84.7
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 7.2e-163 577.4 337 83.4
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 9.4e-163 577.0 336 83.6
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.2e-162 576.6 334 84.1
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 84.6
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 84.6
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 84.6
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.2e-162 576.6 336 83.3
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.6e-162 576.2 333 85.3
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.6e-162 576.2 336 84.2
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.6e-162 576.2 336 83.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.0
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.6e-162 574.7 333 84.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 6.1e-162 574.3 339 84.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.9
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 83.9
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 6.1e-162 574.3 337 84.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.3
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.3
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 7.9e-162 573.9 336 83.3
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 7.9e-162 573.9 338 83.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.3
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.8e-161 572.8 334 83.5
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 83.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.3e-161 572.4 336 83.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.0e-161 572.0 338 83.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-161 571.6 339 83.8
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 83.0
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.7e-161 570.9 335 83.3
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 82.7
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.0
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.0
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.3
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.3e-160 568.5 337 83.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.3e-160 568.5 334 82.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 4.3e-160 568.2 334 82.6
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 9.7e-160 567.0 334 82.9
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.3e-159 566.6 336 81.8
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.3e-159 566.6 333 83.8
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 2.2e-159 565.8 335 83.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-159 565.8 336 83.0
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 4.8e-159 564.7 335 83.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.5e-157 559.7 355 79.4
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.9e-156 555.4 319 85.3
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.8e-156 555.1 333 80.8
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 2.5e-155 552.4 318 85.5
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.1e-154 549.3 335 80.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 6.1e-154 547.7 317 84.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.4e-153 546.6 333 81.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 3.0e-153 545.4 309 85.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 3.9e-153 545.0 378 73.0
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 8.8e-153 543.9 309 85.1
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.3e-152 542.0 319 84.3
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.4e-152 541.6 317 83.3
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 4.8e-151 538.1 336 80.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 6.3e-151 537.7 333 78.7
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.1e-150 537.0 334 78.7
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-149 532.3 333 79.3
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.7e-148 529.6 316 82.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.2e-146 523.5 339 74.0
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.1e-146 522.7 336 78.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 2.3e-145 519.2 337 74.5
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.2e-144 516.9 338 74.6
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.2e-143 512.7 335 74.3
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.2e-143 512.7 335 74.0
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.3e-143 511.1 381 70.1
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 5.5e-139 498.0 421 63.9
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 7.7e-133 477.6 291 80.8
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 3.8e-132 475.3 271 85.6
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.5e-131 473.4 316 72.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.4e-128 462.2 335 71.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 7.5e-128 461.1 265 85.3
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.9e-127 458.4 265 85.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.9e-127 458.4 265 85.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 7.3e-123 444.5 336 69.6
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.2e-120 437.2 344 65.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.2e-120 437.2 337 68.2
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 2.8e-114 416.0 238 85.3
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 2.6e-112 409.5 329 59.9
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 5.8e-112 408.3 251 78.9
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.3e-108 396.4 251 78.1
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.2e-102 375.9 329 59.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 4.1e-102 375.6 246 74.8
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.2e-98 364.0 216 81.0
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 4.7e-98 362.1 326 54.6
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.3e-52 210.3 132 78.0
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.1e-41 171.8 164 59.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.2e-34 150.6 179 53.1
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.5e-27 127.9 79 75.9
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.4e-27 126.3 74 82.4
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-26 123.2 72 80.6
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-25 121.7 79 73.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.7e-18 97.8 77 62.3
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 1.3e-15 88.2 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 6.1e-13 79.3 99 47.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 4.4e-11 73.2 41 78.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.7e-11 72.8 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 100 43.0
Os06g0703600 Oryza sativa ssp. japonica HOM05D002797 ORTHO05D003496 2.7e-08 63.9 171 26.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.3e-07 60.8 60 55.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.3e-07 60.8 60 55.0


User provided reference genes

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