Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 9.9e-200 699.9 350 100.0
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 2.9e-167 592.0 351 84.9
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 1.8e-137 493.0 358 72.3
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 3.6e-101 372.5 378 56.6
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 6.2e-101 371.7 353 59.5
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 6.8e-100 368.2 391 55.8
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 3.8e-98 362.5 353 58.9
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 2.1e-96 356.7 411 53.0
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 5.3e-92 342.0 418 49.5
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 2.6e-91 339.7 421 49.4
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 1.6e-88 330.5 383 51.4
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 3.4e-83 312.8 406 49.0
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 1.8e-79 300.4 342 50.0
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 1.9e-70 270.4 339 47.8
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 2.2e-53 213.8 352 39.8
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 4.1e-52 209.5 327 39.1
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 6.9e-52 208.8 325 40.3
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 1.7e-50 204.1 333 37.2
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.7e-50 204.1 360 36.9
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 9.4e-49 198.4 349 39.3
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 1.2e-48 198.0 346 36.4
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 3.6e-48 196.4 325 37.8
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 7.9e-48 195.3 339 37.5
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 1.0e-47 194.9 329 37.7
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 1.1e-46 191.4 349 39.0
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 5.7e-46 189.1 332 38.3
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 6.3e-45 185.7 349 37.5
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 5.3e-44 182.6 350 34.9
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 9.1e-44 181.8 348 35.1
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 1.5e-43 181.0 328 37.8
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 3.5e-43 179.9 346 34.7
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 4.5e-43 179.5 336 35.1
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 5.9e-43 179.1 353 36.3
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 7.7e-43 178.7 372 32.8
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 1.7e-42 177.6 365 37.5
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 3.8e-42 176.4 325 33.8
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 5.0e-42 176.0 332 36.1
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 1.4e-41 174.5 324 34.0
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 1.9e-41 174.1 349 34.7
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 4.2e-41 172.9 356 35.1
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 1.6e-40 171.0 354 35.6
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 1.4e-39 167.9 352 33.5
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.4e-39 167.9 347 34.9
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 2.3e-39 167.2 347 34.3
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 3.0e-39 166.8 248 42.3
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 3.9e-39 166.4 323 35.3
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.5e-38 164.5 360 33.3
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 2.8e-37 160.2 336 33.3
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 3.7e-37 159.8 336 34.5
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 8.2e-37 158.7 328 31.7
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 4.1e-36 156.4 342 34.5
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 1.3e-34 151.4 349 33.0
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.8e-34 149.8 344 33.1
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.8e-34 149.8 344 33.1
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 5.0e-34 149.4 342 33.0
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 8.5e-34 148.7 362 32.6
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 1.5e-33 147.9 363 30.9
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 1.9e-33 147.5 344 31.7
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 1.9e-33 147.5 335 33.7
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 4.2e-33 146.4 358 31.8
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 5.5e-33 146.0 328 31.4
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 1.6e-32 144.4 342 32.5
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 4.7e-32 142.9 333 32.7
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 2.3e-31 140.6 331 33.2
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 2.3e-31 140.6 301 32.9
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 1.2e-30 138.3 308 33.8
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 2.0e-30 137.5 358 32.1
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 2.0e-30 137.5 328 30.8
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 5.7e-30 136.0 324 32.7
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 9.7e-30 135.2 373 29.8
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 2.8e-29 133.7 349 31.2
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 3.7e-29 133.3 341 31.1
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 1.8e-28 131.0 315 32.7
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 5.3e-28 129.4 347 30.8
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 9.1e-28 128.6 155 45.8
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 2.0e-27 127.5 356 30.1
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 5.0e-26 122.9 347 30.8
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 7.2e-25 119.0 352 28.4
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.2e-24 118.2 338 31.4
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.1e-24 115.9 141 43.3
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 8.0e-24 115.5 252 33.3
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 6.8e-23 112.5 167 39.5
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 8.8e-23 112.1 369 29.3
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 1.7e-21 107.8 376 26.1
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 6.3e-21 105.9 257 29.6
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 3.1e-20 103.6 260 28.8
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 4.1e-20 103.2 124 47.6
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 1.0e-18 98.6 135 41.5
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 1.3e-18 98.2 218 34.4
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 6.6e-18 95.9 138 42.0
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.9e-17 94.4 193 35.8
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 5.5e-17 92.8 133 43.6
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 7.2e-17 92.4 135 40.0
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 2.8e-16 90.5 135 43.0
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 4.7e-16 89.7 335 27.5
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 8.9e-15 85.5 360 27.2
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 8.9e-15 85.5 73 53.4
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 1.5e-14 84.7 221 27.6
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 7.5e-14 82.4 109 40.4
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 9.8e-14 82.0 112 43.8
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 8.3e-13 79.0 327 27.2
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 1.4e-12 78.2 115 40.0
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 7.0e-12 75.9 217 30.0
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 1.3e-10 71.6 229 27.1
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 3.3e-09 67.0 108 38.0
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 5.6e-09 66.2 64 48.4
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 2.8e-08 63.9 157 25.5
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 4.7e-08 63.2 108 37.0
AUR62008166 Chenopodium quinoa HOM05D000060 ORTHO05D000082 3.1e-07 60.5 62 54.8
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 4.4e-06 56.6 350 23.7


User provided reference genes

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