Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 3.9e-66 254.6 125 100.0
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.2e-62 243.0 125 94.4
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 3.8e-61 238.0 125 94.4
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 2.1e-59 232.3 125 89.6
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.0e-58 228.4 125 86.4
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.0e-58 228.4 125 86.4
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.1e-57 226.5 125 87.2
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.5e-57 226.1 125 84.8
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 2.6e-57 225.3 126 88.1
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 3.3e-57 224.9 125 84.0
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.4e-55 219.5 125 83.2
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.5e-52 208.8 125 80.8
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 4.4e-41 171.4 126 66.7
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.7e-40 169.5 129 65.1
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.2e-38 163.3 125 65.6
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 2.0e-38 162.5 129 61.2
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.7e-38 162.2 127 66.1
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 2.7e-38 162.2 122 62.3
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 3.5e-38 161.8 131 64.9
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.0e-37 160.2 119 63.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.3e-37 159.8 119 63.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.7e-37 159.5 128 63.3
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.7e-37 159.5 129 63.6
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 2.9e-37 158.7 119 63.9
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.9e-37 158.7 119 63.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 8.6e-37 157.1 125 60.0
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.1e-36 156.8 128 61.7
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.5e-36 155.6 126 61.1
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.3e-36 155.2 126 59.5
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.2e-36 154.8 126 59.5
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 7.2e-36 154.1 134 56.0
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 9.5e-36 153.7 131 61.1
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 9.5e-36 153.7 130 60.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.2e-35 153.3 126 61.1
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.6e-35 152.9 129 59.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.1e-35 152.5 128 58.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.1e-35 152.5 126 58.7
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 3.6e-35 151.8 127 60.6
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 4.7e-35 151.4 131 58.8
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 8.0e-35 150.6 121 56.2
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-34 150.2 126 57.9
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.4e-34 149.8 125 59.2
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.4e-34 149.8 126 60.3
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.4e-34 149.8 128 60.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.8e-34 149.4 125 56.8
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.8e-34 149.4 125 60.0
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.0e-34 148.7 124 58.9
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 4.0e-34 148.3 125 60.0
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 4.0e-34 148.3 136 55.9
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 5.2e-34 147.9 119 58.8
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 8.9e-34 147.1 139 59.7
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.5e-33 146.4 125 56.0
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.0e-33 146.0 125 56.0
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.0e-33 146.0 122 60.7
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 5.7e-33 144.4 126 60.3
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 7.5e-33 144.1 122 59.0
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.7e-32 142.9 131 55.7
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.8e-32 142.1 118 60.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 2.8e-32 142.1 126 57.1
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 3.7e-32 141.7 127 55.1
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.7e-32 141.7 122 59.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 8.3e-32 140.6 120 59.2
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.4e-31 139.8 122 58.2
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.8e-31 139.4 125 52.0
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 3.1e-31 138.7 119 53.8
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 3.1e-31 138.7 136 54.4
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 3.1e-31 138.7 128 57.0
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 5.4e-31 137.9 136 53.7
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.2e-31 137.1 129 56.6
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 9.2e-31 137.1 129 56.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.6e-30 136.3 122 55.7
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 2.7e-30 135.6 126 56.3
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.9e-30 134.4 127 52.0
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.3e-29 133.3 119 53.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.3e-29 133.3 122 52.5
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.7e-29 132.9 124 54.0
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.7e-29 132.9 125 52.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.7e-29 132.9 121 52.9
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.9e-29 132.1 128 53.1
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 3.8e-29 131.7 90 66.7
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.8e-29 131.7 126 54.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 5.0e-29 131.3 120 55.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.5e-28 129.0 126 54.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 3.3e-28 128.6 119 54.6
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 4.3e-28 128.3 126 55.6
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 5.6e-28 127.9 125 52.0
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.6e-28 127.9 126 52.4
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 5.6e-28 127.9 129 51.9
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 7.3e-28 127.5 127 53.5
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.3e-28 127.5 119 53.8
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 9.5e-28 127.1 127 52.0
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-27 126.7 122 54.1
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.6e-27 126.3 120 55.0
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.8e-27 125.6 65 83.1
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.8e-27 125.6 132 49.2
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 4.7e-27 124.8 120 50.8
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 8.0e-27 124.0 120 54.2
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.0e-27 124.0 126 54.8
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.4e-26 123.2 125 52.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-26 122.1 126 50.0
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 4.0e-26 121.7 115 52.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.2e-25 120.2 129 51.2
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.2e-25 120.2 128 50.0
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.6e-25 119.0 125 51.2
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.8e-25 117.9 120 52.5
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.3e-24 116.7 118 51.7
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.4e-23 113.2 127 49.6
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 4.1e-23 111.7 124 48.4
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.2e-23 110.5 125 44.0
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.2e-23 110.5 125 44.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.2e-22 110.2 125 49.6
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.6e-22 109.8 130 45.4
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-21 106.3 114 46.5
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.9e-21 105.1 130 42.3
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.1e-20 103.6 124 43.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 1.5e-20 103.2 125 45.6
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.9e-20 102.8 120 47.5
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 7.3e-20 100.9 114 44.7
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.4e-18 96.7 122 42.6
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.1e-18 95.5 97 44.3
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 3.1e-18 95.5 128 40.6
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 1.7e-16 89.7 113 41.6
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.9e-15 86.3 64 54.7
THA.LOC104816815 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.9e-15 86.3 61 70.5
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.9e-15 86.3 67 53.7
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.6e-14 83.2 107 40.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 4.6e-14 81.6 87 50.6
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.0e-13 80.5 86 41.9
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 2.3e-13 79.3 74 50.0
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.3e-13 79.3 137 34.3
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.9e-13 78.6 82 37.8
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 4.3e-12 75.1 124 36.3
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.6e-12 74.7 62 51.6
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.1e-11 72.8 62 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.8e-11 72.4 110 35.5
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.8e-11 72.4 150 30.7
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.3e-10 69.3 87 46.0
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.1e-10 68.9 46 58.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.8e-10 67.8 49 55.1
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 8.9e-10 67.4 79 45.6
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.4e-09 65.1 125 30.4
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.3e-08 63.5 72 41.7
C05p60120 Brassica napus HOM05D017352 ORTHO05D097591 1.7e-08 63.2 55 65.5
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.2e-08 62.8 127 36.2
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.2e-08 62.8 127 36.2


User provided reference genes

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