Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.3e-51 205.3 107 100.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.2e-47 193.0 107 95.3
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.4e-43 179.5 107 87.9
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.2e-43 177.6 107 87.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 6.8e-43 177.2 107 87.9
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 4.9e-41 171.0 107 87.9
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 6.4e-41 170.6 107 83.2
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 9.2e-40 166.8 107 83.2
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 9.2e-40 166.8 107 83.2
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.7e-38 162.5 107 82.2
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.5e-37 158.7 99 86.9
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.3e-37 157.9 107 80.4
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 2.8e-36 155.2 95 85.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.6e-36 154.8 109 80.7
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.2e-36 154.1 117 74.4
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.9e-35 150.6 99 77.8
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 4.4e-34 147.9 105 73.3
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.9e-34 146.7 108 75.0
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.2e-33 145.6 133 66.2
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 6.4e-33 144.1 108 75.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-32 142.9 99 77.8
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.3e-32 140.2 128 66.4
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.7e-31 138.7 80 90.0
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.5e-31 138.3 80 90.0
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.3e-30 135.6 105 70.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.1e-29 133.3 93 75.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 4.8e-28 127.9 93 69.9
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-27 125.2 97 70.1
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 6.9e-27 124.0 97 68.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.5e-26 122.9 97 70.1
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.5e-26 121.3 92 67.4
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.6e-26 120.6 95 68.4
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 7.6e-26 120.6 95 68.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.4e-24 115.5 94 68.1
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.2e-24 115.2 97 64.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.6e-23 112.8 100 62.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 6.0e-23 110.9 92 62.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 7.9e-23 110.5 100 60.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.3e-22 109.8 106 58.5
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.3e-22 109.8 100 61.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 3.0e-22 108.6 98 63.3
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 3.0e-22 108.6 98 61.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.0e-22 108.6 101 56.4
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 5.1e-22 107.8 97 60.8
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.5e-21 106.3 102 55.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.9e-21 105.9 107 59.8
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.5e-21 105.5 95 63.2
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 5.6e-21 104.4 102 55.9
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.4e-21 104.0 102 55.9
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 9.6e-21 103.6 102 57.8
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.6e-20 102.8 102 57.8
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.1e-20 102.4 80 68.8
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.1e-20 102.4 97 55.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.8e-20 101.3 95 56.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.2e-20 100.9 100 59.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 8.1e-20 100.5 100 60.0
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.1e-19 100.1 95 61.1
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.1e-19 100.1 81 63.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.8e-19 99.4 93 62.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 2.4e-19 99.0 93 60.2
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.1e-19 98.6 107 55.1
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 5.3e-19 97.8 98 57.1
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.3e-19 97.8 94 58.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 5.3e-19 97.8 102 58.8
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.9e-19 97.4 95 56.8
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 9.0e-19 97.1 101 55.4
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 97 53.6
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 97 53.6
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.0e-18 95.9 110 49.1
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 3.4e-18 95.1 80 65.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.4e-18 95.1 108 49.1
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.5e-18 94.7 107 53.3
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 4.5e-18 94.7 97 55.7
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 7.6e-18 94.0 94 54.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 7.6e-18 94.0 92 56.5
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 9.9e-18 93.6 96 58.3
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.3e-17 93.2 96 56.2
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.7e-17 92.8 98 53.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.2e-17 92.4 95 53.7
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 2.9e-17 92.0 98 54.1
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.8e-17 91.7 103 52.4
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 4.9e-17 91.3 101 52.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 6.4e-17 90.9 92 58.7
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 6.4e-17 90.9 96 54.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 8.4e-17 90.5 96 53.1
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 8.4e-17 90.5 93 53.8
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-16 89.7 93 53.8
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.4e-16 89.7 83 56.6
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.4e-16 89.7 83 59.0
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.9e-16 89.4 57 78.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.9e-16 89.4 97 50.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.4e-16 89.0 92 54.3
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.2e-16 88.6 97 49.5
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 5.5e-16 87.8 80 56.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.5e-16 87.8 97 48.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.1e-16 87.4 91 53.8
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 9.3e-16 87.0 88 52.3
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.2e-15 86.7 107 48.6
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.6e-15 86.3 97 53.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.1e-15 85.9 91 51.6
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.7e-15 85.5 93 53.8
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.5e-15 85.1 76 56.6
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.6e-15 84.7 82 54.9
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 4.6e-15 84.7 93 54.8
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.6e-15 84.7 91 53.8
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 6.0e-15 84.3 92 53.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 7.9e-15 84.0 70 64.3
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.0e-14 83.6 97 51.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.0e-14 83.6 67 61.2
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.0e-14 83.6 85 51.8
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.0e-14 83.6 76 57.9
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.8e-14 82.8 107 48.6
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 3.0e-14 82.0 93 52.7
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.9e-14 81.6 63 61.9
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 5.1e-14 81.3 81 53.1
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 6.7e-14 80.9 79 57.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 6.7e-14 80.9 94 50.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.7e-14 80.5 89 53.9
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.7e-14 80.5 93 51.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 8.7e-14 80.5 60 65.0
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-13 80.1 73 57.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.9e-13 79.3 93 52.7
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.9e-13 79.3 74 58.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-13 79.3 91 44.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.9e-13 79.3 75 56.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.3e-13 78.6 76 55.3
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.3e-13 78.2 95 50.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.3e-13 78.2 95 50.5
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.6e-13 77.8 93 50.5
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.3e-12 76.6 97 49.5
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.6e-12 76.3 59 62.7
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.8e-12 75.5 62 58.1
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.7e-12 75.1 105 48.6
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 6.2e-12 74.3 95 47.4
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 6.2e-12 74.3 64 56.2
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 6.2e-12 74.3 79 50.6
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.8e-11 72.8 88 52.3
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 2.4e-11 72.4 91 42.9
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.0e-11 71.6 53 66.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 5.3e-11 71.2 85 50.6
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 9.0e-11 70.5 70 58.6
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.5e-10 69.7 107 43.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.6e-10 68.9 63 49.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.8e-10 67.8 86 46.5
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.6e-10 67.4 82 50.0
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.0e-09 67.0 77 49.4
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.0e-09 67.0 108 44.4
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.3e-09 66.6 108 45.4
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.9e-09 64.7 97 43.3
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.9e-09 64.7 78 51.3
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 6.5e-09 64.3 92 43.5
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.4e-08 63.2 96 44.8
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.4e-08 63.2 102 44.1
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 4.2e-08 61.6 96 43.8
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 3.5e-07 58.5 98 43.9
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 6.7e-06 54.3 57 57.9
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 8.7e-06 53.9 81 44.4


User provided reference genes

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