Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.5e-131 473.0 261 100.0
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 2.4e-102 375.9 265 83.8
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.1e-92 341.7 271 72.7
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 2.3e-76 289.7 262 61.8
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.7e-74 283.5 266 62.4
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.3e-73 278.5 264 61.4
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 2.7e-69 266.2 226 67.7
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 2.7e-69 266.2 226 67.7
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 2.3e-68 263.1 260 60.8
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-68 263.1 260 60.8
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 3.7e-66 255.8 280 53.9
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-65 253.4 216 63.0
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.0e-63 245.4 217 61.8
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.0e-63 245.4 217 61.8
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 6.5e-63 245.0 218 63.8
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-62 243.8 217 62.2
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 6.1e-61 238.4 210 67.1
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-60 236.5 228 60.1
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.3e-60 236.5 273 53.1
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.7e-60 235.0 272 52.9
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 8.2e-58 228.0 209 65.6
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 2.4e-57 226.5 218 58.7
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 4.1e-57 225.7 229 57.2
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-52 210.3 192 62.0
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-52 209.9 154 66.9
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 2.2e-47 193.4 232 53.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 7.7e-40 168.3 196 49.0
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 2.5e-38 163.3 192 50.5
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 4.3e-38 162.5 192 52.6
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.1e-37 160.2 182 52.2
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 2.8e-37 159.8 125 60.8
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 2.8e-37 159.8 195 47.2
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 6.1e-37 158.7 182 52.2
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 6.1e-37 158.7 182 52.2
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.3e-36 156.8 195 46.7
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 9.8e-35 151.4 194 49.0
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.8e-33 147.1 203 45.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 5.4e-33 145.6 247 39.7
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 1.2e-32 144.4 172 48.8
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.2e-32 144.4 172 48.8
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.0e-32 143.7 209 42.1
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 5.9e-32 142.1 195 43.6
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 7.8e-32 141.7 183 45.4
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.0e-31 141.4 190 46.3
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.6e-31 138.7 213 40.8
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 6.6e-31 138.7 173 48.6
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 8.6e-31 138.3 166 48.2
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.5e-30 137.5 185 41.6
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.3e-30 136.3 187 44.9
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 4.3e-30 136.0 215 45.6
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 4.3e-30 136.0 172 45.9
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 9.5e-30 134.8 199 43.7
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 1.6e-29 134.0 173 46.8
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.8e-29 133.3 178 44.4
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.8e-29 133.3 205 40.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.2e-29 132.1 192 44.3
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 6.2e-29 132.1 201 40.8
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 8.0e-29 131.7 234 40.2
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 8.0e-29 131.7 208 41.8
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 1.0e-28 131.3 220 38.2
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.3e-28 130.2 169 45.0
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.1e-28 129.8 207 42.5
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 8.9e-28 128.3 190 40.0
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 8.9e-28 128.3 190 40.0
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.2e-27 127.9 216 38.4
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.2e-27 127.9 216 38.4
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.2e-27 127.9 193 41.5
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.5e-27 127.5 170 42.9
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 2.0e-27 127.1 188 43.6
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.6e-27 126.7 179 40.2
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.4e-27 126.3 190 39.5
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.4e-27 126.3 175 42.9
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 7.5e-27 125.2 170 43.5
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 9.8e-27 124.8 177 42.4
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-26 124.4 185 43.8
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 1.3e-26 124.4 174 43.1
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 2.9e-26 123.2 183 41.5
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.9e-26 122.5 155 47.1
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 8.3e-26 121.7 194 41.2
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.1e-25 121.3 177 42.9
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 1.9e-25 120.6 177 41.8
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.4e-25 120.2 175 41.7
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 3.2e-25 119.8 182 41.8
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 5.4e-25 119.0 182 42.3
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 7.0e-25 118.6 185 40.0
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 9.2e-25 118.2 159 45.9
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 2.0e-24 117.1 191 41.4
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 2.0e-24 117.1 241 34.9
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 2.0e-24 117.1 183 38.8
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 3.5e-24 116.3 174 39.7
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 4.6e-24 115.9 177 39.0
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 4.6e-24 115.9 168 43.5
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 7.8e-24 115.2 186 35.5
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.0e-23 114.8 195 40.0
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.3e-23 114.4 195 40.0
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.3e-23 113.6 218 36.7
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 2.3e-23 113.6 218 36.7
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 3.0e-23 113.2 221 37.1
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.9e-23 112.8 166 39.8
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 3.9e-23 112.8 181 40.3
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 5.0e-23 112.5 191 39.3
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 6.6e-23 112.1 205 37.1
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 6.6e-23 112.1 177 38.4
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 8.6e-23 111.7 224 38.4
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.1e-22 111.3 189 39.2
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.1e-22 111.3 173 41.6
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.5e-22 110.9 180 37.8
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 1.9e-22 110.5 186 40.3
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 1.9e-22 110.5 243 36.2
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 1.9e-22 110.5 243 36.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 3.3e-22 109.8 178 38.2
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 4.3e-22 109.4 168 37.5
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 9.5e-22 108.2 188 35.6
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 9.5e-22 108.2 191 37.7
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.2e-21 107.8 171 40.9
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 1.6e-21 107.5 160 40.0
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.1e-21 107.1 174 35.6
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 3.6e-21 106.3 181 37.0
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 3.6e-21 106.3 193 37.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 3.6e-21 106.3 211 35.5
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 4.7e-21 105.9 188 35.6
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.7e-21 105.9 198 37.4
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.2e-21 105.5 200 31.5
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 8.1e-21 105.1 196 38.3
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 1.1e-20 104.8 168 39.3
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.4e-20 104.4 177 39.5
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 2.3e-20 103.6 197 38.6
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 3.1e-20 103.2 194 37.1
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 5.2e-20 102.4 193 37.8
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 6.8e-20 102.1 98 53.1
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.2e-19 101.3 187 39.0
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.2e-19 101.3 168 38.1
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 1.5e-19 100.9 180 37.8
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 1.5e-19 100.9 177 37.3
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.0e-19 100.5 225 34.2
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 3.4e-19 99.8 176 35.8
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 7.5e-19 98.6 180 37.2
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 7.5e-19 98.6 227 33.9
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 9.8e-19 98.2 176 38.1
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.3e-18 97.8 188 36.2
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 2.2e-18 97.1 176 34.7
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 4.9e-18 95.9 174 36.8
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.9e-18 95.9 172 37.2
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 6.4e-18 95.5 171 36.3
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 8.3e-18 95.1 225 33.8
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.4e-17 94.4 132 40.2
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.4e-17 94.4 132 39.4
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 1.9e-17 94.0 192 32.8
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-17 94.0 160 35.0
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.9e-17 94.0 160 35.0
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.2e-17 93.2 175 36.0
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 3.2e-17 93.2 187 36.4
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.2e-17 93.2 163 35.6
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 5.4e-17 92.4 163 35.6
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 7.1e-17 92.0 163 35.6
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 9.2e-17 91.7 161 34.8
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.2e-16 91.3 207 33.8
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.6e-16 90.9 163 35.0
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 2.1e-16 90.5 208 32.7
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.1e-16 90.5 171 35.7
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.7e-16 90.1 160 33.8
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 4.6e-16 89.4 172 35.5
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 4.6e-16 89.4 211 32.7
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-15 87.8 178 33.1
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.7e-15 87.4 193 31.6
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 6.6e-15 85.5 168 35.7
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 6.6e-15 85.5 168 35.7
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 8.6e-15 85.1 156 35.3
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.1e-14 84.7 105 46.7
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 1.5e-14 84.3 195 30.8
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 7.3e-14 82.0 170 34.7
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 7.3e-14 82.0 170 34.7
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 7.3e-14 82.0 170 34.7
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.1e-13 80.5 154 32.5
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 3.6e-13 79.7 173 34.7
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 3.6e-13 79.7 172 35.5
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 8.1e-13 78.6 178 35.4
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 2.3e-12 77.0 186 30.6
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 5.2e-12 75.9 178 33.1
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-11 74.7 154 34.4
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 2.0e-11 73.9 200 33.0
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.4e-11 73.2 72 51.4
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 1.7e-10 70.9 190 28.9
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.4e-09 67.8 100 38.0
Dinv24510 Davidia involucrata HOM05D003268 ORTHO05D003719 6.0e-08 62.4 90 46.7
Peaxi162Scf00357g00013 Petunia axillaris HOM05D003268 ORTHO05D003719 9.6e-06 55.1 74 47.3


User provided reference genes

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