Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09483 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 4.4e-50 201.1 106 100.0
AL1G19990 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 1.1e-45 186.4 106 94.3
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 1.1e-45 186.4 106 94.3
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 3.6e-44 181.4 106 92.5
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.8e-43 179.1 106 90.6
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 1.1e-40 169.9 106 85.8
AT1G09470 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 9.2e-40 166.8 106 88.7
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.6e-39 166.0 106 86.8
C05p07470 Brassica napus HOM05D003412 ORTHO05D003962 2.5e-37 158.7 107 81.3
BolC5t29502H Brassica oleracea HOM05D003412 ORTHO05D003962 2.5e-37 158.7 107 81.3
BraA06t23830Z Brassica rapa HOM05D003412 ORTHO05D003962 9.5e-37 156.8 107 81.3
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.2e-34 149.8 106 75.5
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 1.5e-34 149.4 108 79.6
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 9.2e-32 140.2 108 72.2
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 9.2e-32 140.2 109 73.4
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 1.2e-31 139.8 108 72.2
Phvul.007G204500 Phaseolus vulgaris HOM05D003412 ORTHO05D003962 2.0e-31 139.0 109 72.5
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 7.8e-31 137.1 106 70.8
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 1.7e-30 136.0 106 68.9
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 2.3e-30 135.6 106 68.9
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 3.0e-30 135.2 108 68.5
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 3.0e-30 135.2 108 71.3
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 5.0e-30 134.4 107 68.2
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 5.0e-30 134.4 107 68.2
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 6.6e-30 134.0 107 68.2
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 8.6e-30 133.7 110 66.4
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 8.6e-30 133.7 106 67.9
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.1e-29 133.3 111 67.6
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 1.1e-29 133.3 106 67.0
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 1.1e-29 133.3 107 68.2
Atru.chr12.1551 Acer truncatum HOM05D003412 ORTHO05D003962 1.5e-29 132.9 106 69.8
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 1.5e-29 132.9 106 67.9
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 1.5e-29 132.9 106 67.9
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 1.5e-29 132.9 107 68.2
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 1.5e-29 132.9 107 68.2
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 1.9e-29 132.5 106 68.9
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 1.9e-29 132.5 106 67.9
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 1.9e-29 132.5 105 67.6
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 1.9e-29 132.5 105 67.6
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 3.3e-29 131.7 106 67.9
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 4.3e-29 131.3 106 67.0
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 5.6e-29 131.0 105 67.6
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 5.6e-29 131.0 106 65.1
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 7.3e-29 130.6 106 67.0
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 7.3e-29 130.6 106 66.0
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 9.5e-29 130.2 106 66.0
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 9.5e-29 130.2 106 66.0
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 9.5e-29 130.2 106 66.0
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 9.5e-29 130.2 106 65.1
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 1.2e-28 129.8 106 64.2
Dinv30940 Davidia involucrata HOM05D003412 ORTHO05D003962 1.6e-28 129.4 106 67.0
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.6e-28 129.4 106 67.0
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.6e-28 129.4 107 67.3
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 65.1
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 64.2
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 65.1
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 2.8e-28 128.6 107 67.3
Cc02_g35780 Coffea canephora HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 65.1
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 65.1
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 2.8e-28 128.6 106 64.2
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 3.6e-28 128.3 106 64.2
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 3.6e-28 128.3 106 64.2
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 3.6e-28 128.3 106 64.2
CAN.G1248.24 Capsicum annuum HOM05D003412 ORTHO05D003962 4.7e-28 127.9 106 66.0
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 6.2e-28 127.5 106 66.0
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 6.2e-28 127.5 107 67.3
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 63.2
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 66.0
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 65.1
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 65.1
Peaxi162Scf00357g00017 Petunia axillaris HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 66.0
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 8.0e-28 127.1 106 64.2
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 1.0e-27 126.7 106 64.2
FvH4_6g08410 Fragaria vesca HOM05D003412 ORTHO05D003962 1.0e-27 126.7 106 65.1
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 1.0e-27 126.7 106 65.1
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 1.0e-27 126.7 106 65.1
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 1.0e-27 126.7 106 64.2
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 1.4e-27 126.3 106 65.1
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 1.4e-27 126.3 106 66.0
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.4e-27 126.3 106 64.2
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 2.3e-27 125.6 106 65.1
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 2.3e-27 125.6 106 65.1
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 2.3e-27 125.6 107 63.6
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 3.1e-27 125.2 108 64.8
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 3.1e-27 125.2 106 63.2
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 3.1e-27 125.2 107 64.5
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 4.0e-27 124.8 107 60.7
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 4.0e-27 124.8 108 61.1
Sed0017632 Sechium edule HOM05D003412 ORTHO05D003962 4.0e-27 124.8 109 66.1
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 5.2e-27 124.4 108 63.9
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 5.2e-27 124.4 106 62.3
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 5.2e-27 124.4 109 64.2
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 5.2e-27 124.4 107 66.4
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 6.8e-27 124.0 106 61.3
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 6.8e-27 124.0 104 65.4
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 8.9e-27 123.6 109 63.3
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 1.2e-26 123.2 106 64.2
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 1.2e-26 123.2 106 60.4
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 1.5e-26 122.9 106 65.1
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 2.0e-26 122.5 106 62.3
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 2.0e-26 122.5 106 62.3
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 2.0e-26 122.5 107 63.6
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 2.6e-26 122.1 106 61.3
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 2.6e-26 122.1 108 62.0
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 3.4e-26 121.7 108 63.0
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 3.4e-26 121.7 106 62.3
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 3.4e-26 121.7 106 62.3
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 4.4e-26 121.3 106 62.3
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 4.4e-26 121.3 107 62.6
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 5.8e-26 120.9 107 61.7
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 9.8e-26 120.2 106 61.3
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 9.8e-26 120.2 106 60.4
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 9.8e-26 120.2 107 63.6
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 9.8e-26 120.2 106 62.3
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 9.8e-26 120.2 106 60.4
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 1.3e-25 119.8 108 61.1
Oeu000100.1 Olea europaea HOM05D003412 ORTHO05D003962 1.3e-25 119.8 106 62.3
Hund21837 Selenicereus undatus HOM05D003412 ORTHO05D003962 1.3e-25 119.8 105 58.1
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.3e-25 119.8 106 61.3
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 1.7e-25 119.4 106 61.3
BolC9t53547H Brassica oleracea HOM05D003412 ORTHO05D003962 1.7e-25 119.4 106 61.3
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 1.7e-25 119.4 106 63.2
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 1.7e-25 119.4 106 60.4
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 1.7e-25 119.4 106 60.4
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 2.2e-25 119.0 129 55.8
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 2.2e-25 119.0 123 56.9
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 2.9e-25 118.6 106 59.4
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 2.9e-25 118.6 106 59.4
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 3.7e-25 118.2 106 59.4
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 6.4e-25 117.5 108 58.3
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 6.4e-25 117.5 105 61.0
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 1.1e-24 116.7 107 60.7
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 1.4e-24 116.3 106 61.3
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 1.4e-24 116.3 106 61.3
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 2.4e-24 115.5 106 59.4
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.2e-24 115.2 107 59.8
Gohir.A13G113600 Gossypium hirsutum HOM05D003412 ORTHO05D003962 3.2e-24 115.2 106 61.3
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 3.2e-24 115.2 106 58.5
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 4.1e-24 114.8 107 60.7
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 5.4e-24 114.4 101 63.4
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 7.0e-24 114.0 113 55.8
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 1.2e-23 113.2 113 55.8
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 1.2e-23 113.2 105 54.3
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 2.0e-23 112.5 106 58.5
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 2.0e-23 112.5 107 58.9
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 2.7e-23 112.1 106 51.9
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 2.7e-23 112.1 106 55.7
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 1.3e-22 109.8 106 59.4
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 3.9e-22 108.2 106 55.7
Lju99C6G3 Lonicera japonica HOM05D003412 ORTHO05D003962 6.6e-22 107.5 109 54.1
MBI18_g09639_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 8.6e-22 107.1 106 56.6
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 1.5e-21 106.3 106 55.7
unitig_22.g5801 Utricularia gibba HOM05D003412 ORTHO05D003962 1.9e-21 105.9 106 52.8
Aqoxy5G02790 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 3.3e-21 105.1 103 54.4
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 4.3e-21 104.8 106 52.8
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 9.5e-21 103.6 143 47.6
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 3.6e-20 101.7 159 44.0
Lalb_Chr04g0260311 Lupinus albus HOM05D003412 ORTHO05D003962 5.2e-19 97.8 105 55.2
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 1.5e-18 96.3 93 54.8
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 2.6e-18 95.5 106 51.9
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 2.6e-18 95.5 106 52.8
SGA_v2.0_scaffold117G32404 Striga asiatica HOM05D003412 ORTHO05D003962 1.7e-17 92.8 109 50.5
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 8.3e-17 90.5 106 50.9
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 1.9e-16 89.4 110 49.1
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.0e-14 83.6 106 50.0
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 2.3e-14 82.4 106 48.1
Lj9C230G11 Lonicera japonica HOM05D003412 ORTHO05D003962 3.0e-14 82.0 89 51.7
Hma1.2p1_3841F.1_g337660 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 4.7e-12 74.7 61 67.2
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 5.2e-11 71.2 50 70.0
Os01g0292700 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 3.4e-10 68.6 99 47.5
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.3e-09 66.6 106 43.4
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.1e-08 61.6 106 40.6
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.2e-07 60.1 41 70.7
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 1.6e-07 59.7 49 59.2
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 2.1e-07 59.3 101 41.6
Zm00001eb075980 Zea mays HOM05D003412 ORTHO05D003962 6.6e-06 54.3 37 67.6


User provided reference genes

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