Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09450 Arabidopsis thaliana HOM05D006221 ORTHO05D007759 0.0e+00 1203.3 600 100.0
AL1G19970 Arabidopsis lyrata HOM05D006221 ORTHO05D007759 0.0e+00 1096.3 600 91.8
Carub.0001s0880 Capsella rubella HOM05D006221 ORTHO05D007759 3.8e-308 1060.8 601 89.2
CARHR009420 Cardamine hirsuta HOM05D006221 ORTHO05D007759 2.8e-303 1044.6 604 86.1
Sp1g08060 Schrenkiella parvula HOM05D006221 ORTHO05D007759 4.2e-291 1004.2 608 83.2
Thhalv10007117m.g Eutrema salsugineum HOM05D006221 ORTHO05D007759 2.3e-289 998.4 610 83.0
BcaB03g13298 Brassica carinata HOM05D006221 ORTHO05D007759 9.4e-283 976.5 623 79.3
BraA08t35366Z Brassica rapa HOM05D006221 ORTHO05D007759 3.0e-281 971.5 615 80.8
C08p12920 Brassica napus HOM05D006221 ORTHO05D007759 5.0e-276 954.1 619 78.7
A08p34550 Brassica napus HOM05D006221 ORTHO05D007759 6.1e-274 947.2 619 78.0
BolC8t48922H Brassica oleracea HOM05D006221 ORTHO05D007759 2.3e-273 945.3 631 77.2
BcaC07g38511 Brassica carinata HOM05D006221 ORTHO05D007759 3.2e-267 924.9 601 78.5
Aa31LG1G5650 Aethionema arabicum HOM05D006221 ORTHO05D007759 1.8e-265 919.1 626 76.0
THA.LOC104816844 Tarenaya hassleriana HOM05D006221 ORTHO05D007759 6.8e-249 864.0 601 72.7
QL03p010449 Quercus lobata HOM05D006221 ORTHO05D007759 3.0e-204 715.7 615 61.8
Manes.09G180400 Manihot esculenta HOM05D006221 ORTHO05D007759 3.3e-203 712.2 616 61.2
Eucgr.B01816 Eucalyptus grandis HOM05D006221 ORTHO05D007759 2.1e-202 709.5 601 62.2
Atru.chr12.1555 Acer truncatum HOM05D006221 ORTHO05D007759 1.4e-198 696.8 617 60.6
Sabra05G0014800 Salix brachista HOM05D006221 ORTHO05D007759 1.8e-196 689.9 626 58.3
Sabra05G0000700 Salix brachista HOM05D006221 ORTHO05D007759 8.7e-196 687.6 626 58.1
Potri.005G003400 Populus trichocarpa HOM05D006221 ORTHO05D007759 1.9e-195 686.4 626 58.6
Thecc.05G328800 Theobroma cacao HOM05D006221 ORTHO05D007759 4.3e-195 685.3 605 60.7
TWI38G0202 Tripterygium wilfordii HOM05D006221 ORTHO05D007759 1.6e-194 683.3 610 59.8
GSVIVG01031316001 Vitis vinifera HOM05D006221 ORTHO05D007759 1.6e-194 683.3 598 60.9
CiPaw.07G035200 Carya illinoinensis HOM05D006221 ORTHO05D007759 2.4e-193 679.5 554 64.6
Haze_03998 Corylus avellana HOM05D006221 ORTHO05D007759 5.3e-193 678.3 664 57.1
PGR083G2161 Punica granatum HOM05D006221 ORTHO05D007759 5.3e-193 678.3 611 60.4
Ciclev10011303m.g Citrus clementina HOM05D006221 ORTHO05D007759 8.5e-191 671.0 619 57.8
Gohir.A13G113400 Gossypium hirsutum HOM05D006221 ORTHO05D007759 5.5e-190 668.3 604 57.8
Duzib177G0418 Durio zibethinus HOM05D006221 ORTHO05D007759 4.6e-189 665.2 610 58.7
Gohir.D13G116600 Gossypium hirsutum HOM05D006221 ORTHO05D007759 6.1e-189 664.8 604 57.6
Gorai.013G131100 Gossypium raimondii HOM05D006221 ORTHO05D007759 1.4e-188 663.7 614 57.2
CANSAT54G2840 Cannabis sativa HOM05D006221 ORTHO05D007759 4.3e-187 658.7 613 59.7
Sed0012716 Sechium edule HOM05D006221 ORTHO05D007759 2.2e-186 656.4 619 57.8
CsaV3_1G038010 Cucumis sativus L. HOM05D006221 ORTHO05D007759 2.4e-185 652.9 617 57.1
Dinv30939 Davidia involucrata HOM05D006221 ORTHO05D007759 5.3e-185 651.7 617 58.2
TPR.G1625 Trifolium pratense HOM05D006221 ORTHO05D007759 3.2e-182 642.5 602 57.1
Ca_09279_v3 Cicer arietinum L. HOM05D006221 ORTHO05D007759 9.4e-182 641.0 601 55.9
ClCG03G017850 Citrullus lanatus HOM05D006221 ORTHO05D007759 1.2e-181 640.6 622 57.6
Actinidia11678 Actinidia chinensis HOM05D006221 ORTHO05D007759 5.1e-180 635.2 610 56.2
Glyma.19G226000 Glycine max HOM05D006221 ORTHO05D007759 3.3e-179 632.5 607 56.2
Lj1g0008157 Lotus japonicus HOM05D006221 ORTHO05D007759 1.3e-178 630.6 619 56.4
Hma1.2p1_0052F.1_g030430 Hydrangea macrophylla HOM05D006221 ORTHO05D007759 1.7e-178 630.2 620 55.6
Solyc01g101110.3 Solanum lycopersicum HOM05D006221 ORTHO05D007759 6.3e-178 628.2 624 55.0
Lju99A6T47 Lonicera japonica HOM05D006221 ORTHO05D007759 8.2e-178 627.9 626 55.4
arahy.Tifrunner.gnm1.ann1.CKL802 Arachis hypogaea HOM05D006221 ORTHO05D007759 1.4e-177 627.1 610 55.4
Sc16g0009350 Simmondsia chinensis HOM05D006221 ORTHO05D007759 1.4e-177 627.1 613 56.0
Sopen01g044560 Solanum pennellii HOM05D006221 ORTHO05D007759 5.3e-177 625.2 626 54.3
MSTRG.16421 Avicennia marina HOM05D006221 ORTHO05D007759 3.5e-176 622.5 607 55.8
Psat3g014840 Pisum sativum HOM05D006221 ORTHO05D007759 1.7e-175 620.2 555 58.6
Lalb_Chr18g0046191 Lupinus albus HOM05D006221 ORTHO05D007759 1.1e-174 617.5 617 54.5
Oeu016545.1 Olea europaea HOM05D006221 ORTHO05D007759 1.9e-174 616.7 603 55.6
VMungo1383G1939 Vigna mungo HOM05D006221 ORTHO05D007759 2.7e-173 612.8 606 54.0
Phvul.001G222600 Phaseolus vulgaris HOM05D006221 ORTHO05D007759 3.6e-173 612.5 606 54.1
Medtr7g111610 Medicago truncatula HOM05D006221 ORTHO05D007759 8.0e-173 611.3 623 54.4
Migut.B00875 Erythranthe guttata HOM05D006221 ORTHO05D007759 3.9e-172 609.0 610 53.9
Nn3g21902 Nelumbo nucifera HOM05D006221 ORTHO05D007759 1.5e-171 607.1 611 53.7
SGA_v2.0_scaffold671G53422 Striga asiatica HOM05D006221 ORTHO05D007759 2.8e-170 602.8 653 51.5
arahy.Tifrunner.gnm1.ann1.7121P0 Arachis hypogaea HOM05D006221 ORTHO05D007759 3.1e-169 599.4 610 54.1
vmacro01605 Vaccinium macrocarpon HOM05D006221 ORTHO05D007759 3.1e-169 599.4 653 52.2
Prupe.6G305800 Prunus persica HOM05D006221 ORTHO05D007759 2.2e-167 593.2 594 57.6
MBI19_g32730_MAGBIO Magnolia biondii HOM05D006221 ORTHO05D007759 8.5e-167 591.3 626 52.1
Rhsim11G0101500 Rhododendron simsii HOM05D006221 ORTHO05D007759 5.5e-166 588.6 733 47.5
AUR62006807 Chenopodium quinoa HOM05D006221 ORTHO05D007759 2.1e-165 586.6 626 54.6
Hund07275 Selenicereus undatus HOM05D006221 ORTHO05D007759 1.0e-164 584.3 607 54.2
Cc02_g35760 Coffea canephora HOM05D006221 ORTHO05D007759 1.4e-164 583.9 645 51.2
Aqoxy2G02530 Aquilegia oxysepala HOM05D006221 ORTHO05D007759 1.8e-164 583.6 545 55.8
ECA236G2609 Erigeron canadensis HOM05D006221 ORTHO05D007759 1.8e-164 583.6 596 54.0
HanXRQChr14g0449401 Helianthus annuus HOM05D006221 ORTHO05D007759 4.0e-164 582.4 596 54.0
Hund07280 Selenicereus undatus HOM05D006221 ORTHO05D007759 4.0e-164 582.4 539 58.3
RcHm_v2.0_Chr3g0458361 Rosa chinensis HOM05D006221 ORTHO05D007759 5.2e-164 582.0 593 55.8
PSO761G0564 Papaver somniferum HOM05D006221 ORTHO05D007759 1.3e-162 577.4 608 51.0
PSO210G0944 Papaver somniferum HOM05D006221 ORTHO05D007759 1.7e-162 577.0 608 50.7
AUR62000466 Chenopodium quinoa HOM05D006221 ORTHO05D007759 4.8e-162 575.5 619 54.3
MD04G1187300 Malus domestica HOM05D006221 ORTHO05D007759 7.7e-160 568.2 620 53.9
EL10Ac4g09547 Beta vulgaris HOM05D006221 ORTHO05D007759 6.5e-159 565.1 602 53.0
SalBow5G5479 Salvia bowleyana HOM05D006221 ORTHO05D007759 5.5e-158 562.0 657 49.6
FAN05G2605 Fragaria x ananassa HOM05D006221 ORTHO05D007759 8.0e-157 558.1 592 53.5
FvH4_6g08390 Fragaria vesca HOM05D006221 ORTHO05D007759 1.0e-156 557.8 596 53.5
Lsat_1_v5_gn_9_77141 Lactuca sativa HOM05D006221 ORTHO05D007759 2.3e-156 556.6 603 51.6
DCAR_005251 Daucus carota HOM05D006221 ORTHO05D007759 1.2e-155 554.3 630 51.3
PGSC0003DMG400018290 Solanum tuberosum HOM05D006221 ORTHO05D007759 1.2e-152 544.3 606 51.2
FAN02G1566 Fragaria x ananassa HOM05D006221 ORTHO05D007759 5.9e-152 542.0 576 53.6
Peaxi162Scf00357g00116 Petunia axillaris HOM05D006221 ORTHO05D007759 1.5e-150 537.3 616 50.5
Nitab4.5_0014566g0010 Nicotiana tabacum HOM05D006221 ORTHO05D007759 1.6e-149 533.9 609 50.6
CAN.G1248.26 Capsicum annuum HOM05D006221 ORTHO05D007759 1.2e-147 527.7 661 47.2
Nitab4.5_0001931g0080 Nicotiana tabacum HOM05D006221 ORTHO05D007759 1.1e-145 521.2 545 52.3
Hma1.2p1_0052F.1_g030440 Hydrangea macrophylla HOM05D006221 ORTHO05D007759 1.3e-138 497.7 548 50.9
Potri.013G003600 Populus trichocarpa HOM05D006221 ORTHO05D007759 3.2e-137 493.0 360 66.4
Zm00001eb109970 Zea mays HOM05D006221 ORTHO05D007759 3.2e-137 493.0 606 48.0
PSO017G3773 Papaver somniferum HOM05D006221 ORTHO05D007759 1.0e-135 488.0 566 49.3
HPP92_001185 Vanilla planifolia HOM05D006221 ORTHO05D007759 2.8e-133 479.9 654 44.6
Dinv30938 Davidia involucrata HOM05D006221 ORTHO05D007759 2.6e-131 473.4 360 65.8
SHI18018 Sapria himalayana HOM05D006221 ORTHO05D007759 3.0e-127 459.9 512 50.2
unitig_699.g19069 Utricularia gibba HOM05D006221 ORTHO05D007759 3.1e-124 449.9 565 49.0
ATR0796G167 Amborella trichopoda HOM05D006221 ORTHO05D007759 7.5e-123 445.3 606 45.7
SEGI_23402 Sequoiadendron giganteum HOM05D006221 ORTHO05D007759 3.3e-110 403.3 376 54.0
MELO3C015244.2 Cucumis melo HOM05D006221 ORTHO05D007759 1.7e-106 391.0 366 56.3
Ah.10g026960 Amaranthus hybridus HOM05D006221 ORTHO05D007759 1.0e-103 381.7 426 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2896 Anthoceros agrestis HOM05D006221 ORTHO05D007759 6.2e-101 372.5 330 55.2
Pp3c5_21110 Physcomitrium patens HOM05D006221 ORTHO05D007759 4.5e-99 366.3 334 54.5
Mapoly0101s0065 Marchantia polymorpha HOM05D006221 ORTHO05D007759 7.1e-97 359.0 368 51.1
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.8e-95 354.4 454 46.0
CDE08G0155 Ceratophyllum demersum HOM05D006221 ORTHO05D007759 4.3e-94 349.7 562 40.6
CBR_g46893 Chara braunii HOM05D006221 ORTHO05D007759 3.4e-83 313.5 336 47.3
FAN09G0827 Fragaria x ananassa HOM05D006221 ORTHO05D007759 5.1e-79 299.7 487 42.5
Cpa.g.sc48.218 Carica papaya HOM05D006221 ORTHO05D007759 1.8e-71 274.6 519 36.8
COL.COLO4_05510 Corchorus olitorius HOM05D006221 ORTHO05D007759 1.8e-68 264.6 609 36.0
SMO169G0298 Selaginella moellendorffii HOM05D006221 ORTHO05D007759 6.3e-61 239.6 231 50.6
Glyma.03G228700 Glycine max HOM05D006221 ORTHO05D007759 4.4e-54 216.9 145 73.1
Cre02.g108000 Chlamydomonas reinhardtii HOM05D006221 ORTHO05D007759 2.4e-52 211.1 349 35.5
Lj9A230T20 Lonicera japonica HOM05D006221 ORTHO05D007759 3.7e-37 160.6 262 38.5
MCO05G201 Micromonas commoda HOM05D006221 ORTHO05D007759 6.6e-34 149.8 168 47.6
PRCOL_00002024 Prasinoderma coloniale HOM05D006221 ORTHO05D007759 3.4e-30 137.5 190 40.5
Actinidia16908 Actinidia chinensis HOM05D006221 ORTHO05D007759 2.0e-27 128.3 148 51.4
Nn5g27477 Nelumbo nucifera HOM05D001388 ORTHO05D001234 3.3e-25 120.9 122 50.8
C09p35620 Brassica napus HOM05D006221 ORTHO05D007759 2.1e-24 118.2 67 80.6
BolC9t56398H Brassica oleracea HOM05D006221 ORTHO05D007759 2.1e-24 118.2 67 80.6
PRCOL_00002025 Prasinoderma coloniale HOM05D006221 ORTHO05D007759 4.7e-16 90.5 144 36.1
FvH4_1g12820 Fragaria vesca HOM05D006221 ORTHO05D007759 6.0e-11 73.6 100 43.0
Actinidia26529 Actinidia chinensis HOM05D006221 ORTHO05D007759 2.1e-08 65.1 37 67.6
PSO170G3396 Papaver somniferum HOM05D000502 ORTHO05D000356 5.2e-07 60.5 117 38.5


User provided reference genes

Program Settings