Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 8.1e-194 680.2 349 100.0
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 2.7e-173 612.1 349 90.5
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 3.1e-169 598.6 356 87.9
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 1.5e-160 569.7 350 86.0
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 3.4e-152 542.0 352 82.1
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 1.0e-151 540.4 356 81.2
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.2e-144 516.9 355 80.0
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 4.0e-140 501.9 354 78.0
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 5.7e-139 498.0 353 77.6
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 1.3e-135 486.9 354 75.7
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 1.3e-135 486.9 354 75.7
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 3.2e-134 482.3 359 74.9
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 6.1e-133 478.0 348 72.4
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 5.4e-121 438.3 347 67.4
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 1.5e-99 367.1 361 57.1
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 3.9e-95 352.4 327 58.4
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 1.2e-93 347.4 343 56.9
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 3.1e-92 342.8 337 54.0
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.2e-91 340.9 322 57.5
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 1.5e-91 340.5 338 55.9
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 1.5e-91 340.5 350 53.4
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 2.0e-91 340.1 330 58.2
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 1.1e-89 334.3 327 55.0
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.4e-89 334.0 346 55.2
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 1.0e-87 327.8 344 51.7
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 2.3e-87 326.6 334 52.1
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 3.9e-87 325.9 351 52.4
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 1.1e-86 324.3 340 52.9
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.5e-86 323.2 340 52.9
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 2.5e-86 323.2 340 52.6
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 4.3e-86 322.4 333 53.5
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.6e-85 320.5 343 52.8
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.6e-85 320.5 337 53.4
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 3.6e-85 319.3 345 52.5
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 3.6e-85 319.3 349 50.1
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 4.7e-85 318.9 346 52.9
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.1e-84 317.8 336 53.6
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 1.4e-84 317.4 321 55.8
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 1.4e-84 317.4 329 52.9
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 1.8e-84 317.0 322 54.0
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 2.4e-84 316.6 329 55.0
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 4.0e-84 315.8 328 54.6
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 6.9e-84 315.1 327 55.7
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.2e-83 314.3 322 54.0
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.2e-83 314.3 371 49.1
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.5e-83 313.9 339 52.5
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 1.5e-83 313.9 338 51.8
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.0e-83 313.5 317 55.2
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 2.6e-83 313.2 318 54.1
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 1.3e-82 310.8 369 49.9
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.7e-82 310.5 336 50.9
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 2.2e-82 310.1 347 50.4
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 2.2e-82 310.1 316 51.6
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 2.9e-82 309.7 317 52.4
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 8.4e-82 308.1 333 53.2
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 8.4e-82 308.1 335 50.1
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.1e-81 307.8 353 51.0
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 2.4e-81 306.6 335 50.1
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 9.3e-81 304.7 326 50.6
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 7.8e-80 301.6 323 53.3
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.0e-79 301.2 319 54.5
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 5.1e-79 298.9 325 53.5
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 1.1e-78 297.7 332 52.7
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.1e-78 297.7 332 52.7
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 3.3e-78 296.2 331 49.2
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.3e-78 296.2 319 54.2
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 4.3e-78 295.8 330 53.0
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 7.3e-78 295.0 315 51.7
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 7.3e-78 295.0 328 50.0
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 3.6e-77 292.7 336 51.2
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 3.6e-77 292.7 339 52.2
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 6.2e-77 292.0 339 51.0
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 8.1e-77 291.6 345 49.6
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 1.4e-76 290.8 325 52.0
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 9.0e-76 288.1 334 47.6
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 2.6e-75 286.6 339 49.6
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 5.8e-75 285.4 324 50.6
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 9.9e-75 284.6 318 51.9
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 2.2e-74 283.5 440 40.9
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 1.1e-73 281.2 326 48.5
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 9.3e-73 278.1 350 44.9
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 6.0e-72 275.4 337 47.5
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 3.0e-71 273.1 333 49.5
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.1e-69 266.9 377 44.6
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 4.8e-69 265.8 318 47.5
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 2.6e-67 260.0 347 48.4
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 4.9e-66 255.8 272 53.7
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.0e-63 248.1 326 47.2
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.1e-62 244.6 249 55.4
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 2.5e-62 243.4 315 44.4
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 9.6e-62 241.5 282 45.7
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 1.8e-60 237.3 378 39.4
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 3.3e-54 216.5 266 49.6
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 2.7e-48 196.8 214 50.9
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 1.3e-45 188.0 440 33.6
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 6.1e-40 169.1 359 32.6
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 1.0e-39 168.3 183 50.8
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.4e-39 167.9 371 31.0
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 1.4e-33 147.9 227 41.0
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 3.2e-33 146.7 135 60.0
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 2.6e-30 137.1 292 36.0
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.4e-23 114.8 212 34.9
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 4.4e-22 109.8 474 24.1
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 4.4e-22 109.8 96 60.4
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 9.7e-22 108.6 102 55.9
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 4.1e-20 103.2 180 38.3
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 9.1e-20 102.1 71 73.2
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 5.9e-19 99.4 98 49.0
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 6.5e-18 95.9 83 60.2
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 1.9e-17 94.4 250 26.8
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 2.1e-16 90.9 82 57.3
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 6.1e-16 89.4 86 53.5
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 1.5e-14 84.7 260 28.5
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.1e-12 78.6 60 63.3
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 7.0e-12 75.9 253 27.3
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 3.5e-11 73.6 40 77.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 3.5e-11 73.6 141 31.2
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 1.0e-10 72.0 54 57.4
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.5e-09 68.2 131 35.9
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 4.0e-07 60.1 43 62.8


User provided reference genes

Program Settings