Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 9.4e-151 537.0 296 100.0
AL1G19150 Arabidopsis lyrata HOM05D006208 ORTHO05D007606 1.6e-113 413.3 239 90.4
Carub.0001s0806 Capsella rubella HOM05D006208 ORTHO05D007606 1.2e-108 397.1 240 85.8
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 2.8e-102 375.9 238 82.8
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 6.2e-102 374.8 238 82.4
CARHR008630 Cardamine hirsuta HOM05D006208 ORTHO05D007606 5.2e-101 371.7 240 81.2
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 6.8e-101 371.3 241 80.9
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 7.6e-100 367.9 242 81.0
Thhalv10008513m.g Eutrema salsugineum HOM05D006208 ORTHO05D007606 1.2e-94 350.5 239 78.2
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 3.5e-89 332.4 239 74.1
Aa31sc449G40 Aethionema arabicum HOM05D006208 ORTHO05D007606 4.9e-83 312.0 240 67.5
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 1.6e-73 280.4 240 63.8
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 1.6e-70 270.4 237 63.3
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 3.8e-67 259.2 233 59.7
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 8.4e-67 258.1 235 57.0
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 1.4e-66 257.3 213 63.8
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 3.2e-66 256.1 213 63.4
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 7.1e-66 255.0 234 60.7
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.6e-65 253.8 213 63.4
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 2.7e-65 253.1 229 57.6
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 7.9e-65 251.5 241 56.8
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 2.3e-64 250.0 263 51.7
Sabra13G0059000 Salix brachista HOM05D006208 ORTHO05D007606 3.0e-64 249.6 234 55.6
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 1.9e-63 246.9 232 57.8
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 1.9e-63 246.9 232 57.8
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 3.3e-63 246.1 234 60.7
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 1.1e-61 241.1 236 56.4
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 3.1e-61 239.6 232 56.0
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 4.1e-61 239.2 229 54.1
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 1.2e-60 237.7 234 54.7
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 2.6e-60 236.5 230 53.9
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 3.4e-60 236.1 233 53.6
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 7.6e-60 235.0 235 55.3
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 1.3e-59 234.2 237 53.6
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 3.8e-59 232.6 216 56.5
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.4e-58 230.7 235 53.6
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 2.5e-58 229.9 238 53.8
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 3.2e-58 229.6 222 55.4
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 3.2e-58 229.6 238 52.1
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 4.2e-58 229.2 236 53.8
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 4.2e-58 229.2 236 55.1
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 4.2e-58 229.2 235 52.8
unitig_0.g581 Utricularia gibba HOM05D006208 ORTHO05D007606 5.5e-58 228.8 216 57.4
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 1.2e-57 227.6 235 53.2
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.6e-57 227.3 236 54.2
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 1.0e-56 224.6 220 54.1
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 2.3e-56 223.4 239 50.6
Eucgr.K01547 Eucalyptus grandis HOM05D006208 ORTHO05D007606 3.0e-56 223.0 238 52.9
Migut.B00931 Erythranthe guttata HOM05D006208 ORTHO05D007606 6.7e-56 221.9 230 50.9
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 1.1e-55 221.1 241 53.5
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 1.9e-55 220.3 263 49.4
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 2.5e-55 219.9 217 51.6
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 7.4e-55 218.4 236 50.8
Psat3g085200 Pisum sativum HOM05D006208 ORTHO05D007606 9.7e-55 218.0 185 61.6
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 2.2e-54 216.9 231 52.4
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 2.2e-54 216.9 244 50.0
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 2.2e-54 216.9 236 50.4
Peaxi162Scf00146g00097 Petunia axillaris HOM05D006208 ORTHO05D007606 2.2e-54 216.9 214 51.9
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 4.8e-54 215.7 244 51.6
SGA_v2.0_scaffold66G22407 Striga asiatica HOM05D006208 ORTHO05D007606 6.3e-54 215.3 227 50.2
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 5.3e-53 212.2 231 50.6
Phvul.001G107700 Phaseolus vulgaris HOM05D006208 ORTHO05D007606 5.3e-53 212.2 182 61.0
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 6.9e-53 211.8 239 51.0
Nn8g39480 Nelumbo nucifera HOM05D006208 ORTHO05D007606 1.2e-52 211.1 232 50.0
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 1.0e-51 208.0 240 50.0
SalBow6G5221 Salvia bowleyana HOM05D006208 ORTHO05D007606 1.3e-51 207.6 247 44.1
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 5.0e-51 205.7 242 48.8
C05p06800 Brassica napus HOM05D006208 ORTHO05D007606 1.1e-50 204.5 139 77.0
BolC5t29439H Brassica oleracea HOM05D006208 ORTHO05D007606 1.4e-50 204.1 139 77.0
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 1.9e-50 203.8 236 49.2
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 9.4e-50 201.4 236 47.0
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 9.4e-50 201.4 236 50.8
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 1.2e-49 201.1 291 44.0
MSTRG.19726 Avicennia marina HOM05D006208 ORTHO05D007606 4.6e-49 199.1 237 45.1
MBI19_g04334_MAGBIO Magnolia biondii HOM05D006208 ORTHO05D007606 1.8e-48 197.2 229 47.2
Peaxi162Scf00146g00107 Petunia axillaris HOM05D006208 ORTHO05D007606 2.6e-47 193.4 210 48.6
Peaxi162Scf62544g00003 Petunia axillaris HOM05D006208 ORTHO05D007606 2.6e-47 193.4 210 48.6
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 7.4e-47 191.8 219 50.7
arahy.Tifrunner.gnm1.ann1.2NMK5X Arachis hypogaea HOM05D006208 ORTHO05D007606 3.7e-46 189.5 184 56.5
ECA232G0512 Erigeron canadensis HOM05D006208 ORTHO05D007606 1.4e-45 187.6 237 43.0
DCAR_020701 Daucus carota HOM05D006208 ORTHO05D007606 2.6e-44 183.3 238 46.6
CsaV3_4G029050 Cucumis sativus L. HOM05D006208 ORTHO05D007606 4.5e-44 182.6 176 56.8
Ah.12g062010 Amaranthus hybridus HOM05D006208 ORTHO05D007606 1.0e-43 181.4 187 52.9
Sed0009124 Sechium edule HOM05D006208 ORTHO05D007606 5.5e-42 175.6 213 47.4
HPP92_022884 Vanilla planifolia HOM05D006208 ORTHO05D007606 7.2e-42 175.3 224 46.4
ATR0068G109 Amborella trichopoda HOM05D006208 ORTHO05D007606 2.7e-41 173.3 231 43.3
HanXRQChr09g0255371 Helianthus annuus HOM05D006208 ORTHO05D007606 1.8e-37 160.6 204 47.1
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 2.2e-35 153.7 163 49.1
Os01g0814700 Oryza sativa ssp. japonica HOM05D006208 ORTHO05D007606 2.2e-35 153.7 189 45.0
Zm00001eb149890 Zea mays HOM05D006208 ORTHO05D007606 2.9e-35 153.3 187 45.5
SEGI_27241 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 5.0e-35 152.5 208 40.4
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 4.7e-33 146.0 163 48.5
Lsat_1_v5_gn_4_159701 Lactuca sativa HOM05D006208 ORTHO05D007606 8.0e-33 145.2 202 41.6
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 1.8e-29 134.0 82 82.9
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 1.8e-29 134.0 82 82.9
CDE09G0594 Ceratophyllum demersum HOM05D002946 ORTHO05D007606 1.0e-27 128.3 172 45.3
Prupe.7G018500 Prunus persica HOM05D006208 ORTHO05D007606 1.7e-27 127.5 139 48.2
Pp3c18_14450 Physcomitrium patens HOM05D006208 ORTHO05D007606 2.7e-25 120.2 232 29.7
TPR.G7831 Trifolium pratense HOM05D006208 ORTHO05D007606 8.0e-25 118.6 144 46.5
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 1.5e-23 114.4 78 73.1
Rhsim03G0045600 Rhododendron simsii HOM05D006208 ORTHO05D007606 2.0e-23 114.0 155 43.2
AL5G15230 Arabidopsis lyrata HOM05D001124 ORTHO05D007606 3.7e-22 109.8 65 93.8
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 3.7e-22 109.8 100 58.0
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 1.1e-21 108.2 116 50.0
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 3.1e-21 106.7 98 57.1
FAN08G0500 Fragaria x ananassa HOM05D006208 ORTHO05D007606 4.1e-21 106.3 95 58.9
SMO351G0165 Selaginella moellendorffii HOM05D006208 ORTHO05D007606 9.1e-21 105.1 224 32.6
CBR_g36542 Chara braunii HOM05D006208 ORTHO05D007606 4.5e-20 102.8 208 33.2
VMungo1383G2538 Vigna mungo HOM05D006208 ORTHO05D007606 9.5e-18 95.1 146 39.7
SHI14855 Sapria himalayana HOM05D000023 ORTHO05D000014 6.1e-17 92.4 175 39.4
TPR.G15311 Trifolium pratense HOM05D006208 ORTHO05D007606 1.8e-16 90.9 85 54.1
Medtr7g087170 Medicago truncatula HOM05D006208 ORTHO05D007606 4.0e-16 89.7 139 39.6
FAN21G1425 Fragaria x ananassa HOM05D006208 ORTHO05D007606 1.7e-14 84.3 85 52.9
Mapoly0047s0023 Marchantia polymorpha HOM05D006208 ORTHO05D007606 8.3e-14 82.0 214 27.1
Peaxi162Scf00146g00108 Petunia axillaris HOM05D006208 ORTHO05D007606 2.4e-13 80.5 74 51.4
Sc22g0000880 Simmondsia chinensis HOM05D006208 ORTHO05D007606 5.4e-13 79.3 159 34.0
Medtr7g087330 Medicago truncatula HOM05D006208 ORTHO05D007606 1.6e-12 77.8 98 48.0
AagrBONN_evm.TU.Sc2ySwM_117.1480 Anthoceros agrestis HOM05D006208 ORTHO05D007606 7.8e-12 75.5 160 28.8
SHI14857 Sapria himalayana HOM05D006208 ORTHO05D007606 7.8e-12 75.5 54 66.7
Aqoxy3G03662 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 1.3e-11 74.7 177 31.1
TPR.G7822 Trifolium pratense HOM05D006208 ORTHO05D007606 5.0e-11 72.8 98 44.9
C03p16190 Brassica napus HOM05D026471 ORTHO05D027980 7.3e-10 68.9 49 73.5
C03p30130 Brassica napus HOM05D026471 ORTHO05D027980 7.3e-10 68.9 49 73.5
Aqoxy3G03625 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 8.0e-09 65.5 135 35.6
Oeu054958.1 Olea europaea HOM05D006208 ORTHO05D007606 8.0e-09 65.5 79 45.6
Oeu029768.1 Olea europaea HOM05D006208 ORTHO05D007606 2.3e-08 63.9 54 46.3
SalBow5G5293 Salvia bowleyana HOM05D000001 ORTHO05D009952 4.0e-08 63.2 123 34.1
SEGI_30866 Sequoiadendron giganteum HOM05D006208 ORTHO05D007606 4.0e-08 63.2 116 34.5
Oeu029769.2 Olea europaea HOM05D006208 ORTHO05D007606 5.2e-08 62.8 74 36.5
Oeu032547.1 Olea europaea HOM05D006208 ORTHO05D007606 3.7e-06 56.6 53 41.5


User provided reference genes

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