Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.5e-57 226.1 124 100.0
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 1.9e-49 199.1 124 89.5
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 1.6e-48 196.1 124 88.7
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 3.1e-47 191.8 124 85.5
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 5.9e-46 187.6 124 83.9
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 2.9e-45 185.3 125 84.8
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 2.9e-45 185.3 125 84.8
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 1.1e-44 183.3 125 83.2
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 1.4e-44 183.0 125 83.2
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 1.9e-44 182.6 125 82.4
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 4.2e-44 181.4 125 82.4
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 7.2e-44 180.6 126 84.1
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 7.2e-44 180.6 126 84.1
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 7.2e-44 180.6 126 84.1
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 6.3e-40 167.5 124 79.0
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 3.8e-37 158.3 129 70.5
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.9e-36 156.0 129 72.1
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 5.1e-34 147.9 128 68.0
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 7.2e-28 127.5 70 94.3
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 9.4e-28 127.1 104 67.3
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 2.1e-27 125.9 124 57.3
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 2.1e-27 125.9 124 57.3
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 6.1e-27 124.4 127 57.5
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 2.3e-26 122.5 125 58.4
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 4.0e-26 121.7 125 59.2
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 5.2e-26 121.3 131 57.3
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 8.8e-26 120.6 126 57.1
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 3.3e-25 118.6 126 55.6
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 4.4e-25 118.2 120 55.0
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 7.5e-25 117.5 127 55.1
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 7.5e-25 117.5 127 55.1
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 9.7e-25 117.1 132 54.5
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.7e-24 116.3 134 54.5
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 1.7e-24 116.3 125 52.0
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 3.7e-24 115.2 134 53.7
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 4.8e-24 114.8 131 53.4
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 4.8e-24 114.8 124 52.4
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 6.3e-24 114.4 127 52.8
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 1.8e-23 112.8 105 60.0
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 1.8e-23 112.8 130 53.8
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 5.3e-23 111.3 128 53.1
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 5.3e-23 111.3 128 53.1
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 7.0e-23 110.9 131 51.9
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 1.6e-22 109.8 130 51.5
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.0e-22 109.4 128 51.6
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 2.0e-22 109.4 150 46.7
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 2.0e-22 109.4 121 54.5
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 2.7e-22 109.0 111 55.9
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.7e-22 109.0 112 57.1
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 2.7e-22 109.0 125 51.2
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 3.5e-22 108.6 125 50.4
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 4.5e-22 108.2 127 58.3
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 7.7e-22 107.5 98 59.2
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 7.7e-22 107.5 125 52.8
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 1.0e-21 107.1 126 55.6
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.3e-21 106.7 127 52.0
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 1.3e-21 106.7 127 52.0
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 2.9e-21 105.5 126 51.6
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.9e-21 105.5 128 51.6
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 6.5e-21 104.4 133 51.1
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 6.5e-21 104.4 130 50.8
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 6.5e-21 104.4 110 54.5
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 8.5e-21 104.0 132 48.5
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 8.5e-21 104.0 130 52.3
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 1.1e-20 103.6 127 51.2
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.1e-20 103.6 156 45.5
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 1.5e-20 103.2 121 52.9
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 1.5e-20 103.2 100 57.0
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 1.9e-20 102.8 97 58.8
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.9e-20 102.8 127 51.2
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.9e-20 102.8 108 55.6
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 1.9e-20 102.8 125 48.8
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 3.2e-20 102.1 133 51.9
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 5.5e-20 101.3 101 55.4
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 1.2e-19 100.1 109 56.0
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.2e-19 100.1 100 55.0
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.6e-19 99.8 125 53.6
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 3.6e-19 98.6 134 48.5
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 4.7e-19 98.2 128 49.2
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 4.7e-19 98.2 125 46.4
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 6.1e-19 97.8 104 52.9
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 6.1e-19 97.8 105 52.4
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 6.1e-19 97.8 129 47.3
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.4e-18 96.7 85 63.5
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 1.4e-18 96.7 107 51.4
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 1.8e-18 96.3 88 62.5
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 1.8e-18 96.3 127 47.2
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 5.2e-18 94.7 122 48.4
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 6.8e-18 94.4 77 58.4
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 6.8e-18 94.4 122 48.4
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 1.2e-17 93.6 130 53.8
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.2e-17 93.6 128 48.4
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 1.5e-17 93.2 124 46.8
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 2.0e-17 92.8 136 50.0
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 5.7e-17 91.3 76 61.8
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 5.7e-17 91.3 76 61.8
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 2.2e-16 89.4 127 43.3
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 4.8e-16 88.2 83 56.6
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.4e-15 86.7 91 50.5
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 2.4e-15 85.9 130 47.7
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 9.1e-15 84.0 133 47.4
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 1.6e-14 83.2 113 47.8
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 2.7e-14 82.4 105 47.6
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.0e-13 80.5 107 48.6
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.7e-13 79.7 105 45.7
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 2.9e-13 79.0 139 41.0
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 1.0e-10 70.5 107 42.1
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.1e-07 60.5 73 47.9


User provided reference genes

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