Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.8e-280 968.0 501 100.0
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.7e-261 905.6 501 92.6
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 3.2e-252 874.8 502 88.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 8.2e-240 833.6 501 85.8
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.0e-238 828.9 498 86.1
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 4.7e-235 817.8 503 84.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 4.7e-235 817.8 503 84.7
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.7e-229 799.3 503 83.3
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 3.1e-223 778.5 501 80.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-220 769.6 503 80.3
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 5.2e-218 761.1 446 87.0
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 4.1e-215 751.5 446 86.5
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.3e-213 746.5 503 79.1
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 3.8e-213 745.0 504 79.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 2.1e-211 739.2 503 78.1
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.7e-211 738.0 502 76.9
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 2.4e-207 725.7 506 76.9
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.4e-207 724.5 506 76.9
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.7e-197 693.0 501 73.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 4.4e-193 678.3 467 76.0
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.1e-157 558.5 508 59.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 3.7e-155 552.4 497 59.4
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 3.7e-155 552.4 509 58.0
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.8e-154 550.1 511 58.9
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 6.9e-154 548.1 511 58.7
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 9.0e-154 547.7 503 58.3
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 9.0e-154 547.7 506 57.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 2.0e-153 546.6 502 58.0
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.6e-153 546.2 503 58.3
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.4e-153 545.8 512 57.8
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 4.5e-153 545.4 512 57.8
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.5e-153 545.4 512 57.8
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 4.9e-152 542.0 514 58.4
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 8.4e-152 541.2 504 57.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.1e-151 540.8 501 58.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.1e-151 540.8 484 58.9
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.9e-151 540.0 526 57.2
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 4.2e-151 538.9 511 56.9
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 7.1e-151 538.1 492 57.3
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.6e-150 537.0 507 56.6
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.7e-150 536.2 494 58.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 3.5e-150 535.8 512 57.6
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.5e-150 535.8 512 57.0
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.8e-149 533.5 502 58.2
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 3.0e-149 532.7 501 55.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.0e-149 532.7 507 56.6
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 3.9e-149 532.3 507 56.0
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 3.9e-149 532.3 500 56.4
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.9e-149 532.3 500 58.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 8.7e-149 531.2 504 56.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 2.5e-148 529.6 507 55.6
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 4.3e-148 528.9 507 55.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 2.2e-147 526.6 496 56.5
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.8e-147 526.2 501 55.1
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.7e-147 525.8 522 53.8
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.1e-146 524.2 512 54.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.4e-146 523.1 500 56.2
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.3e-146 521.9 487 55.9
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 6.9e-146 521.5 506 56.9
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.5e-145 520.4 425 62.6
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.0e-145 520.0 492 56.9
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.6e-145 519.6 498 55.6
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 7.7e-145 518.1 500 56.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 6.5e-144 515.0 493 55.8
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.1e-143 514.2 495 56.8
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.2e-143 512.7 502 55.8
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.2e-143 512.3 514 53.9
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 9.4e-143 511.1 499 54.3
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 3.6e-142 509.2 498 54.6
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 6.1e-142 508.4 483 56.5
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.4e-141 507.3 510 55.5
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.8e-141 506.9 469 56.5
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.3e-141 506.5 493 56.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.3e-141 506.5 510 55.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 5.1e-141 505.4 500 54.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 5.1e-141 505.4 604 48.3
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.7e-141 505.0 500 55.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 5.7e-140 501.9 507 53.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 9.7e-140 501.1 432 60.4
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.8e-139 499.6 507 52.9
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 3.7e-139 499.2 478 57.1
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 6.3e-139 498.4 497 54.9
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.4e-138 496.5 455 58.0
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.3e-138 495.4 455 57.6
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.2e-137 494.2 444 58.6
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 3.4e-137 492.7 462 57.4
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.3e-136 490.7 504 54.8
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.2e-136 490.0 507 52.1
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 2.5e-135 486.5 440 59.3
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.2e-135 486.1 465 55.1
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.6e-134 483.8 500 53.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.6e-134 483.8 495 53.5
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 7.9e-134 481.5 434 58.8
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.4e-133 480.7 471 54.6
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 9.7e-132 474.6 510 52.4
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.7e-131 472.6 497 51.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.4e-130 470.7 490 53.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.2e-129 467.6 452 53.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.0e-128 464.5 445 57.3
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 6.1e-126 455.3 512 51.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.1e-126 455.3 439 56.0
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.0e-125 454.5 474 51.3
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.9e-125 452.6 442 54.5
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 6.7e-125 451.8 507 49.1
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 8.8e-125 451.4 418 57.2
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 4.4e-124 449.1 504 51.4
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 9.7e-124 448.0 518 49.8
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 5.5e-119 432.2 524 46.9
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.5e-116 424.1 436 53.2
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.7e-115 420.6 447 53.5
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.7e-115 420.6 498 49.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.4e-114 416.8 408 54.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.0e-112 411.4 444 51.6
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 6.8e-109 398.7 405 53.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 8.8e-109 398.3 314 63.1
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 6.3e-107 392.1 424 50.9
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.5e-105 386.3 491 46.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 6.1e-102 375.6 428 51.4
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.4e-100 369.8 498 43.0
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 3.2e-98 363.2 394 52.8
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 4.5e-97 359.4 344 54.9
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.1e-95 354.8 474 42.8
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.3e-93 347.1 313 57.8
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.4e-90 337.8 391 51.4
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.3e-87 326.6 462 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.2e-86 324.7 482 41.1
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-86 323.6 309 56.0
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 3.1e-85 320.1 409 44.3
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.3e-72 277.3 320 47.8
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 7.3e-71 272.3 238 57.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.1e-70 270.8 290 50.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 6.2e-70 269.2 480 34.8
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 4.2e-66 256.5 198 64.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 7.8e-65 252.3 190 66.8
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.3e-63 246.5 313 47.6
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 7.8e-57 225.7 237 52.7
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.1e-46 191.0 132 68.2
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 8.1e-46 189.1 195 54.9
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.2e-41 175.3 439 28.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 5.8e-36 156.4 84 85.7
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.8e-35 153.7 291 32.3
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.2e-30 137.9 201 38.3
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-29 135.2 127 58.3
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 5.5e-26 123.2 77 75.3
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.7e-25 120.9 73 76.7
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-24 118.6 73 75.3
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.1e-23 115.5 77 67.5
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 4.5e-20 103.6 80 58.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.7e-17 93.6 124 47.6
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.7e-17 93.6 145 42.1
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.0e-15 88.2 78 57.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 5.7e-15 86.7 46 82.6
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 3.2e-10 70.9 57 63.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 8.8e-08 62.8 396 24.2


User provided reference genes

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