Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 4.6e-104 381.3 207 100.0
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 4.7e-80 301.6 208 82.2
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 3.9e-79 298.5 209 80.4
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 1.5e-75 286.6 208 78.8
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 1.0e-66 257.3 215 74.0
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 4.0e-63 245.4 216 74.5
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 4.1e-60 235.3 209 69.4
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 1.3e-58 230.3 210 68.6
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 8.5e-58 227.6 210 68.1
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 8.5e-58 227.6 210 68.1
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 4.8e-53 211.8 212 62.7
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 6.3e-53 211.5 212 62.3
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 1.7e-50 203.4 210 63.8
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 3.8e-50 202.2 210 63.8
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 1.4e-47 193.7 208 61.1
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 4.0e-47 192.2 210 61.4
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 6.3e-45 184.9 205 56.1
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 6.3e-45 184.9 108 88.0
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 4.1e-44 182.2 172 63.4
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 4.3e-25 119.0 98 61.2
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 6.2e-24 115.2 147 46.3
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 6.2e-24 115.2 111 54.1
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 4.0e-23 112.5 98 58.2
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 1.2e-22 110.9 104 53.8
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.0e-22 110.2 65 83.1
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 4.4e-22 109.0 99 52.5
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.8e-22 108.6 118 52.5
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 5.8e-22 108.6 99 53.5
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 7.5e-22 108.2 89 59.6
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 9.9e-22 107.8 122 50.8
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 9.9e-22 107.8 210 36.2
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.3e-21 107.5 99 52.5
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 1.3e-21 107.5 164 42.1
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 1.3e-21 107.5 101 57.4
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.9e-21 106.3 101 55.4
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 1.1e-20 104.4 107 50.5
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.4e-20 104.0 196 40.8
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.9e-20 103.6 94 54.3
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 2.4e-20 103.2 103 52.4
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 3.2e-20 102.8 103 50.5
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 3.2e-20 102.8 94 52.1
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 4.1e-20 102.4 88 56.8
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 5.4e-20 102.1 110 48.2
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 5.4e-20 102.1 201 36.3
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 1.2e-19 100.9 219 34.7
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.6e-19 100.5 119 46.2
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 3.5e-19 99.4 108 50.0
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 3.5e-19 99.4 102 50.0
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 6.0e-19 98.6 93 52.7
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 6.0e-19 98.6 89 52.8
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 7.8e-19 98.2 88 53.4
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 7.8e-19 98.2 130 40.0
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 7.8e-19 98.2 155 41.9
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.0e-18 97.8 95 50.5
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 1.0e-18 97.8 95 54.7
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.0e-18 97.8 88 52.3
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.3e-18 97.4 95 48.4
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 1.7e-18 97.1 158 41.8
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 2.3e-18 96.7 202 35.6
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 2.3e-18 96.7 89 52.8
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 2.3e-18 96.7 156 37.8
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 3.0e-18 96.3 201 39.8
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 3.0e-18 96.3 89 51.7
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 3.9e-18 95.9 157 37.6
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 5.1e-18 95.5 88 52.3
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 6.6e-18 95.1 88 56.8
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 6.6e-18 95.1 95 53.7
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 6.6e-18 95.1 144 39.6
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 8.6e-18 94.7 87 50.6
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 1.1e-17 94.4 157 40.8
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 1.5e-17 94.0 95 47.4
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 1.9e-17 93.6 94 46.8
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 5.6e-17 92.0 94 48.9
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.2e-16 90.9 144 39.6
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 2.1e-16 90.1 119 44.5
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 2.1e-16 90.1 128 39.8
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 4.7e-16 89.0 105 45.7
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 4.7e-16 89.0 162 35.8
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 1.4e-15 87.4 88 53.4
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 2.4e-15 86.7 97 45.4
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 3.1e-15 86.3 154 37.0
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 4.0e-15 85.9 125 40.0
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.5e-14 84.0 211 38.4
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 9.9e-14 81.3 105 42.9
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 4.9e-13 79.0 126 39.7
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 4.9e-13 79.0 165 37.6
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 8.4e-13 78.2 122 41.0
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 1.1e-12 77.8 140 40.7
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.9e-12 77.0 202 32.2
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 1.9e-12 77.0 174 32.8
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 7.1e-12 75.1 146 30.8
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 7.1e-12 75.1 166 32.5
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 7.1e-12 75.1 83 47.0
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 7.1e-12 75.1 131 34.4
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 2.7e-11 73.2 59 57.6
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 6.0e-11 72.0 126 35.7
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 7.8e-11 71.6 97 39.2
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 1.0e-10 71.2 87 37.9
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 3.0e-10 69.7 176 34.1
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 6.6e-10 68.6 93 43.0
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 1.5e-09 67.4 67 52.2
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 5.6e-09 65.5 72 41.7
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 4.7e-08 62.4 186 32.8
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 8.1e-08 61.6 65 43.1
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 1.8e-07 60.5 203 30.0
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 1.8e-07 60.5 129 28.7
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 5.3e-07 58.9 137 26.3
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 2.0e-06 57.0 95 31.6
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 2.6e-06 56.6 91 28.6
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 2.6e-06 56.6 91 29.7
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 2.6e-06 56.6 90 28.9
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 3.4e-06 56.2 85 32.9
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 3.4e-06 56.2 91 34.1
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 4.4e-06 55.8 91 28.6
EL10Ac3g06402 Beta vulgaris HOM05D000789 ORTHO05D000897 7.6e-06 55.1 85 32.9
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 7.6e-06 55.1 91 31.9
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 7.6e-06 55.1 96 27.1
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 7.6e-06 55.1 91 29.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 7.6e-06 55.1 90 30.0
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 7.6e-06 55.1 91 30.8
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 7.6e-06 55.1 87 33.3
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 9.9e-06 54.7 78 33.3
AL8G24720 Arabidopsis lyrata HOM05D000789 ORTHO05D038648 9.9e-06 54.7 100 31.0


User provided reference genes

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