Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.0e-154 550.1 276 100.0
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.2e-154 548.9 276 99.6
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 5.3e-140 501.1 276 91.3
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 5.2e-135 484.6 277 90.6
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.7e-133 479.6 276 88.0
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.1e-132 476.9 276 88.0
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.1e-128 462.6 277 85.9
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 2.7e-128 462.2 276 86.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.4e-127 459.9 276 86.2
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 4.1e-124 448.4 279 83.9
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.3e-121 438.7 258 86.8
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 5.7e-118 427.9 274 78.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 2.0e-115 419.5 276 74.6
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.0e-98 361.7 211 88.2
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 5.6e-97 358.2 276 64.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 4.0e-95 352.1 276 63.8
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 4.4e-94 348.6 277 62.8
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 7.5e-94 347.8 276 61.6
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 9.9e-94 347.4 278 64.4
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.7e-93 346.7 277 62.8
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.2e-93 346.3 272 62.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.7e-93 345.5 253 66.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.3e-93 344.4 278 63.3
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 8.3e-93 344.4 276 61.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 5.4e-92 341.7 252 64.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.2e-91 340.5 252 65.5
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.6e-91 340.1 276 59.8
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 3.5e-91 339.0 276 61.2
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 7.8e-91 337.8 252 65.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 7.8e-91 337.8 238 68.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 7.8e-91 337.8 276 60.1
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.3e-90 337.0 276 61.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-90 337.0 253 66.4
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.3e-90 337.0 276 59.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.7e-90 336.7 252 64.7
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.7e-90 336.7 278 62.2
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.9e-90 335.5 276 60.5
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.6e-90 334.3 253 65.6
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.1e-89 334.0 278 61.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.5e-89 333.6 241 65.6
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 276 59.8
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.9e-89 333.2 207 77.8
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.9e-89 333.2 276 59.1
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 276 59.8
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 2.5e-89 332.8 278 61.9
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.3e-89 332.4 276 60.1
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 3.3e-89 332.4 271 62.4
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.3e-89 332.4 277 59.9
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 4.3e-89 332.0 278 59.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.3e-89 332.0 253 65.6
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.6e-89 331.6 275 62.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 9.5e-89 330.9 234 69.7
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 9.5e-89 330.9 232 67.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.1e-88 329.7 242 66.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.1e-88 329.7 273 58.6
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.7e-88 328.6 269 61.0
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 6.2e-88 328.2 271 62.0
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.8e-87 326.6 274 59.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.1e-87 325.9 228 68.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.1e-87 325.9 252 63.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 3.1e-87 325.9 276 58.7
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 4.0e-87 325.5 232 66.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 5.2e-87 325.1 253 61.7
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.8e-87 324.7 247 66.0
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.9e-87 324.3 273 60.1
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.2e-86 323.9 237 66.7
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.5e-86 323.6 274 59.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.5e-86 323.6 249 65.1
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.0e-86 323.2 277 59.2
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 9.9e-86 320.9 244 63.5
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.3e-85 320.5 244 64.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.2e-85 319.7 234 65.4
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 3.8e-85 318.9 228 68.9
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.4e-85 318.2 249 63.5
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.4e-84 317.0 237 65.8
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.4e-84 317.0 244 62.7
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.9e-84 316.6 239 64.9
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 1.9e-84 316.6 230 65.2
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 2.4e-84 316.2 276 56.9
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 3.2e-84 315.8 204 73.5
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.2e-84 315.8 220 70.5
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.2e-84 315.8 245 62.9
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 5.4e-84 315.1 200 83.0
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 5.4e-84 315.1 276 57.2
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 7.1e-84 314.7 205 72.7
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 9.2e-84 314.3 234 65.4
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.2e-83 313.9 213 70.4
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.6e-83 313.5 253 61.3
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 2.7e-83 312.8 205 74.1
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.7e-83 312.8 253 60.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.6e-83 312.0 244 63.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.6e-83 312.0 234 65.0
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.0e-83 311.6 207 72.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.3e-82 310.5 254 59.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 6.6e-82 308.1 250 61.6
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 6.6e-82 308.1 234 63.7
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.1e-81 307.4 237 63.7
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.5e-81 306.2 275 56.7
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.6e-81 305.1 230 65.2
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.3e-81 304.7 207 71.0
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 7.3e-81 304.7 246 61.0
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 1.2e-80 303.9 223 66.4
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 4.7e-80 302.0 255 59.2
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.5e-75 285.8 278 55.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.0e-75 285.0 211 64.5
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 6.0e-75 285.0 220 65.0
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.0e-74 284.3 234 59.0
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.9e-74 282.3 204 68.6
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 8.7e-74 281.2 211 61.1
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.6e-72 276.9 196 68.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 3.6e-72 275.8 257 56.0
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.4e-71 273.1 247 59.1
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.4e-71 273.1 227 59.9
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 9.9e-70 267.7 207 61.8
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.2e-67 260.8 215 57.7
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.1e-66 255.4 212 60.8
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.9e-65 253.4 199 62.3
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.9e-60 236.9 211 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.7e-58 228.4 209 51.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.9e-57 226.9 258 45.0
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.2e-56 221.9 182 64.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.0e-53 214.5 250 46.0
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 9.3e-52 208.0 212 48.6
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 2.1e-51 206.8 194 53.6
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 4.3e-49 199.1 169 61.5
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 4.5e-46 189.1 246 37.4
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.6e-43 180.6 130 64.6
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.5e-41 174.1 217 41.0
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 9.1e-39 164.9 109 73.4
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 6.3e-32 142.1 139 56.1
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 5.0e-29 132.5 107 64.5
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.2e-28 128.6 130 52.3
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 5.3e-23 112.5 91 59.3
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 3.5e-22 109.8 144 41.7
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.1e-20 104.8 88 62.5
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-15 88.2 58 74.1
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.0e-13 81.6 246 31.3
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 2.2e-13 80.5 127 40.9
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.3e-08 64.7 58 58.6
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 3.5e-06 56.6 60 50.0


User provided reference genes

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